View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6423_high_2 (Length: 401)

Name: NF6423_high_2
Description: NF6423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6423_high_2
NF6423_high_2
[»] chr7 (8 HSPs)
chr7 (1-214)||(24511362-24511575)
chr7 (224-391)||(24511156-24511323)
chr7 (224-328)||(24509283-24509387)
chr7 (323-391)||(24510068-24510136)
chr7 (56-144)||(25035874-25035962)
chr7 (87-160)||(17711004-17711077)
chr7 (309-351)||(2046892-2046934)
chr7 (177-214)||(24509207-24509244)
[»] chr6 (1 HSPs)
chr6 (275-391)||(13146574-13146690)
[»] chr5 (3 HSPs)
chr5 (56-173)||(14417526-14417644)
chr5 (224-325)||(15162677-15162778)
chr5 (57-109)||(17039399-17039451)
[»] chr4 (3 HSPs)
chr4 (56-118)||(8569817-8569879)
chr4 (56-118)||(54189333-54189395)
chr4 (308-376)||(46632290-46632358)
[»] chr3 (2 HSPs)
chr3 (56-118)||(28695778-28695840)
chr3 (262-359)||(27427602-27427699)
[»] chr8 (1 HSPs)
chr8 (266-345)||(19400738-19400816)
[»] chr1 (2 HSPs)
chr1 (228-359)||(23544403-23544528)
chr1 (63-109)||(43532021-43532067)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 24511575 - 24511362
Alignment:
Q  1 tcatcatcgtttatagcaggatgttttctttgcttcatctatgtggtggttcatgcactacgacacatatgaccttttgcaacatattatatgtgacatt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24511575 tcatcatcgtttatcgcaggatgttttctttgcttcatctatgtggtggttcatgcactactacacatatgaccttttgcaacatattatatgtgacatt 24511476  T
Q  101 ttttaaaaagtgttacatacacctccttttattacatgcttccacgccttattagcccagattattatttttgttctttgtgtgactgaacgcaaattct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24511475 ttttaaaaagtgttacatacacctccttttattacatgcttccacgccttattagtccagattattatttttgttctttgtgtgactgaacgcaaattct 24511376  T
Q  201 aatattattctaat 214  Q
    ||||||||||||||    
T  24511375 aatattattctaat 24511362  T

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Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 224 - 391
Target Start/End: Complemental strand, 24511323 - 24511156
Alignment:
Q  224 ttctttgaaaaggctggctctgggattgatggaatgctttagtgcagttcatggtttgagtcatggtaattttactttggtttcgttctactttatgata 323  Q
    ||||||||| |||||||||| ||||||| ||||||||||||| |  |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24511323 ttctttgaataggctggctccgggattggtggaatgctttagagatgttcatggtttgagtcatggtaattttactttggttacgttctactttatgata 24511224  T
Q  324 tacttacatattgaatttaaatgtgatatattgtttgcacctttgatagctaatagttatgacctatg 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24511223 tacttacatattgaatttaaatgtgatatattgtttgcacctttgatagctaatagttatgacctatg 24511156  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 24509283 - 24509387
Alignment:
Q  224 ttctttgaaaaggctggctctgggattgatggaatgctttagtgcagttcatggtttgagtcatggtaattttactttggtttcgttctactttatgata 323  Q
    |||||| || ||||||||||  |||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24509283 ttcttttaataggctggctccaggattggtggaatattttagtgcagttcatggtttgagtcatggtaattttactttggtttcgttccactttatgata 24509382  T
Q  324 tactt 328  Q
    |||||    
T  24509383 tactt 24509387  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 24510068 - 24510136
Alignment:
Q  323 atacttacatattgaatttaaatgtgatatattgtttgcacctttgatagctaatagttatgacctatg 391  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  24510068 atacttacatattgaatttaaatgtgatatagtgtttggacctttgatagctaatggttatgacctatg 24510136  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 25035962 - 25035874
Alignment:
Q  56 cactacgacacatatgaccttttgcaacatattatatgtgacattttttaaaaagtgttacatacacctccttttattacatgcttcca 144  Q
    |||||| || |||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||  ||||||||    
T  25035962 cactactacgcatatgactttttgcaacatcttatatgtgacattttttagaaagtgttacatgcacctccttttaatatgtgcttcca 25035874  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 17711077 - 17711004
Alignment:
Q  87 ttatatgtgacattttttaaaaagtgttacatacacctccttttattacatgcttccacgccttattagcccag 160  Q
    |||||||||||||||| || ||||||||| || |||||||||||| ||  |||||||| ||||| |||||||||    
T  17711077 ttatatgtgacattttgtagaaagtgttagatgcacctccttttaatatgtgcttccatgcctttttagcccag 17711004  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 2046892 - 2046934
Alignment:
Q  309 ttctactttatgatatacttacatattgaatttaaatgtgata 351  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  2046892 ttctactttatgatatacatacatcttgaatttaaatgtgata 2046934  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 24509207 - 24509244
Alignment:
Q  177 tttgtgtgactgaacgcaaattctaatattattctaat 214  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  24509207 tttgtgtgattgaacacaaattctaatattattctaat 24509244  T

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Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 13146690 - 13146574
Alignment:
Q  275 tggtttgagtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaaatgtgatatattgtttgcacctttgatagct 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||    
T  13146690 tggtttgagtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaaaggtgatatagtgtttggacctttgatagct 13146591  T
Q  375 aatagttatgacctatg 391  Q
    ||| |||||||||||||    
T  13146590 aatggttatgacctatg 13146574  T

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Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 14417644 - 14417526
Alignment:
Q  56 cactacgacacatatgaccttttgcaacatattatatgtgacatttttt-aaaaagtgttacatacacctccttttattacatgcttccacgccttatta 154  Q
    |||||| ||||||||||  ||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||| || |||| |||| ||||| |||    
T  14417644 cactactacacatatgaagttttgcaacatcttttatgtgacatttttttaaaaagtgttacatgcacctccttttaatatatgcctccatgccttttta 14417545  T
Q  155 gcccagattattatttttg 173  Q
    ||| || ||||||||||||    
T  14417544 gccgagtttattatttttg 14417526  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 15162778 - 15162677
Alignment:
Q  224 ttctttgaaaaggctggctctgggattgatggaatgctttagtgcagttcatggtttgagtcatggtaattttactttggtttcgttctactttatgata 323  Q
    ||||||||  ||||| |||| ||||||| ||||||  |||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||    
T  15162778 ttctttgagtaggcttgctccgggattggtggaattttttagtgcagttcatggttttaatcatggtaattttactttggtttcattctacattatgata 15162679  T
Q  324 ta 325  Q
    ||    
T  15162678 ta 15162677  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 17039451 - 17039399
Alignment:
Q  57 actacgacacatatgaccttttgcaacatattatatgtgacattttttaaaaa 109  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  17039451 actactacacatatgaccttttgcaacatcttatatgtgacatattttaaaaa 17039399  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 8569817 - 8569879
Alignment:
Q  56 cactacgacacatatgaccttttgcaacatattatatgtgacattttttaaaaagtgttacat 118  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8569817 cactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacat 8569879  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 54189395 - 54189333
Alignment:
Q  56 cactacgacacatatgaccttttgcaacatattatatgtgacattttttaaaaagtgttacat 118  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  54189395 cactacgacacatataaccttttgcaacatcttatatgtgacattttttaaaaagtgttacat 54189333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 376
Target Start/End: Complemental strand, 46632358 - 46632290
Alignment:
Q  308 gttctactttatgatatacttacatattgaatttaaatgtgatatattg-tttgcacctttgatagctaa 376  Q
    ||||||||||||||||||  ||||||||||| ||| |||||||||| || |||| ||||||| |||||||    
T  46632358 gttctactttatgatatagatacatattgaa-ttatatgtgatatagtgttttggacctttggtagctaa 46632290  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 28695778 - 28695840
Alignment:
Q  56 cactacgacacatatgaccttttgcaacatattatatgtgacattttttaaaaagtgttacat 118  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28695778 cactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacat 28695840  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 359
Target Start/End: Complemental strand, 27427699 - 27427602
Alignment:
Q  262 ttagtgcagttcatggtttgagtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaaatgtgatatattgttt 359  Q
    |||||||||||||||| |||| | |||||| ||||| ||||| |||||||   | |||||||||| || ||||||| ||||||||| ||||| |||||    
T  27427699 ttagtgcagttcatgggttgaataatggtagttttagtttgggttcgttcgtgtgtatgatatacataaatattgagtttaaatgttatataatgttt 27427602  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 19400738 - 19400816
Alignment:
Q  266 tgcagttcatggtttgagtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaaat 345  Q
    ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||| |||||| || |||||||||||||||    
T  19400738 tgcagttcatgctttgaatcatggta-ttttaatttggtttcgttctactttattatatacataaatattgaatttaaat 19400816  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 359
Target Start/End: Complemental strand, 23544528 - 23544403
Alignment:
Q  228 ttgaaaaggctggctctgggattgatggaatgctttagtgcagttcatggtttgagtcatggtaattttactttggtttcgttctactttatgatatact 327  Q
    ||||| ||| |||||| ||| ||| |||||||||| ||||||||||||||||||| | ||||||| |||||||| |||| | ||||   ||||||||||     
T  23544528 ttgaataggttggctccggggttggtggaatgctt-agtgcagttcatggtttgaataatggtaagtttacttttgtttggctcta---tatgatatac- 23544434  T
Q  328 tacatattgaatttaaatgtgatatattgttt 359  Q
     |||  ||||||||||| |||||||| |||||    
T  23544433 -acagcttgaatttaaacgtgatatactgttt 23544403  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 43532067 - 43532021
Alignment:
Q  63 acacatatgaccttttgcaacatattatatgtgacattttttaaaaa 109  Q
    |||| |||||| ||||||||||| |||||||||||||||| ||||||    
T  43532067 acacgtatgactttttgcaacatcttatatgtgacattttataaaaa 43532021  T

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