View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6423_low_1 (Length: 588)
Name: NF6423_low_1
Description: NF6423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6423_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 21580133 - 21580509
Alignment:
| Q |
8 |
gacatcatcatgtataaatggagaaatgaggagatattattaaatcattatgttcatttgatagattgtgagtcagaggaaagatccttggtaaagtgga |
107 |
Q |
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| T |
21580133 |
gacatcatcatgtataaatggagaaatgaggagatattattaaatcattatgttcatttgatagattgtgagtcagaggaaagatccttggtaaagtgga |
21580232 |
T |
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| Q |
108 |
gaattcttttctccattttctttcaattttccattccaataatacgattcttccgttcaaatcaaatttttccctcagatgtgagttagaaagtttttga |
207 |
Q |
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| T |
21580233 |
gaattcttttctccattttctttcaattttccattccaataatacgattcttccgttcaaatcaaatttttccctaagatgtgagttagaaagtttttga |
21580332 |
T |
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| Q |
208 |
gtgtcgttttagccctgtttggataaaacttaatttgcaatttatagcaaactaaggtcaattgtttttcttatacgttataagttgtttttattagcta |
307 |
Q |
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| T |
21580333 |
gtgtcgttttagccctgtttggataaaacttaatttgcaatttatagcaaattaaggtcaattgtttttcttatacgttataagttgtttttattagcta |
21580432 |
T |
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| Q |
308 |
ccttgaagaacttgtagaaataagctaaaataagctttctcnnnnnnnaaataagctaaaataagcttacgtgttgg |
384 |
Q |
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| T |
21580433 |
ccttgaagaacttgtagaaataagctaaaataagctttctctttttttaaataagctaaaataagcttacgtgttgg |
21580509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 488 - 580
Target Start/End: Original strand, 21580625 - 21580717
Alignment:
| Q |
488 |
gggttgtaattgtaaatgaactgtgatgggttgaattgttttccataatacacctcttgagaggtgatgtcttgctgctgtctttgatgatgt |
580 |
Q |
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| T |
21580625 |
gggttgtaattgtaaatgaactgtgatgggttgaattgttttccataatacacctcttgagaggtgatgtcttgctgctgtctttggtgatgt |
21580717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 41197629 - 41197669
Alignment:
| Q |
267 |
aattgtttttcttatacgttataagttgtttttattagcta |
307 |
Q |
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| T |
41197629 |
aattattttttttatacgttataagttgtttttataagcta |
41197669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 40439041 - 40439105
Alignment:
| Q |
273 |
ttttcttatacgttataagttgtttttattagctaccttgaagaacttgtagaaataagctaaaa |
337 |
Q |
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| T |
40439041 |
ttttcatatatgttataagttgttttcattagctatcctgaagagcttatggaaataagttaaaa |
40439105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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