View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6423_low_5 (Length: 341)
Name: NF6423_low_5
Description: NF6423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6423_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 24 - 314
Target Start/End: Complemental strand, 37010135 - 37009832
Alignment:
| Q |
24 |
ttctctcttttatcgtaaaccaactcaaacaaaaattgtttgatcatacattaatgtttaactaacatcaattttacaaatttaattcaatcaaaatcaa |
123 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37010135 |
ttctctcttttatcctaaacctactcaaacaaaaattgtttgatcatacattaatgtttaactaaaatcaattttacaaatttaattcaatcaaaatcag |
37010036 |
T |
|
| Q |
124 |
ttac-------------aacacacgcttaaaatcatatttatactcatttttaattttgggtctacacaaaatcgacttagctaggaatgtattatttat |
210 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
37010035 |
ttaataatatagaatgaaacacacgcttaaaatcatatttatactcattcttaattttgggtctacacaaaatcgacttagctacgaatgtattttttat |
37009936 |
T |
|
| Q |
211 |
caacaagctcgtgaatttggtctctaaatcaatacctttggtgaccaattattttgtctatgagtaggtcactaaaaagcaaaagaaatgtaaaattatt |
310 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37009935 |
caacaagctcgtgaatttggtctttaaatcaatacctttcgtgaccaattattttgtctatgagtaggtcactaaaaagcaaaagaaatgtaaaattatt |
37009836 |
T |
|
| Q |
311 |
ttac |
314 |
Q |
| |
|
|||| |
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|
| T |
37009835 |
ttac |
37009832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 13238929 - 13238974
Alignment:
| Q |
80 |
tttaactaacatcaattttacaaatttaattcaatcaaaatcaatt |
125 |
Q |
| |
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||||||||| |||||||||||||| | ||||||||||||||||||| |
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|
| T |
13238929 |
tttaactaaaatcaattttacaaaatgaattcaatcaaaatcaatt |
13238974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 17220436 - 17220481
Alignment:
| Q |
80 |
tttaactaacatcaattttacaaatttaattcaatcaaaatcaatt |
125 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
17220436 |
tttaactaaagtcaattttacaaaactaattcaatcaaaatcaatt |
17220481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 41408271 - 41408314
Alignment:
| Q |
82 |
taactaacatcaattttacaaatttaattcaatcaaaatcaatt |
125 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||||||||| |
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| T |
41408271 |
taactaaaatcaattctacaaaattaattcaatcaaaatcaatt |
41408314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 29970881 - 29970926
Alignment:
| Q |
80 |
tttaactaacatcaattttacaaatttaattcaatcaaaatcaatt |
125 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||| ||||||||||||| |
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|
| T |
29970881 |
tttaactaaaatcaattatacaaattcaattctatcaaaatcaatt |
29970926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 15677771 - 15677739
Alignment:
| Q |
93 |
aattttacaaatttaattcaatcaaaatcaatt |
125 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
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|
| T |
15677771 |
aattttataaatttaattcaatcaaaatcaatt |
15677739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 53078431 - 53078474
Alignment:
| Q |
82 |
taactaacatcaattttacaaatttaattcaatcaaaatcaatt |
125 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||||||||| |
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|
| T |
53078431 |
taactaaaatcaattctacaaaattaattcaatcaaaatcaatt |
53078474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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