View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6423_low_6 (Length: 340)

Name: NF6423_low_6
Description: NF6423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6423_low_6
NF6423_low_6
[»] scaffold0091 (3 HSPs)
scaffold0091 (13-127)||(29057-29172)
scaffold0091 (190-275)||(28907-28994)
scaffold0091 (203-275)||(24710-24782)
[»] scaffold0218 (2 HSPs)
scaffold0218 (13-126)||(14378-14492)
scaffold0218 (195-275)||(14227-14307)
[»] chr3 (10 HSPs)
chr3 (13-124)||(16642300-16642412)
chr3 (13-125)||(4712800-4712913)
chr3 (13-127)||(14062778-14062893)
chr3 (13-127)||(14055037-14055152)
chr3 (203-275)||(16642123-16642195)
chr3 (203-275)||(4712997-4713069)
chr3 (203-269)||(14062983-14063049)
chr3 (203-275)||(14055222-14055294)
chr3 (23-123)||(13926858-13926960)
chr3 (224-275)||(14481800-14481851)
[»] chr6 (4 HSPs)
chr6 (13-127)||(14989375-14989490)
chr6 (13-125)||(14980263-14980376)
chr6 (203-275)||(14980460-14980532)
chr6 (90-127)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (13-127)||(51658662-51658777)
chr1 (20-127)||(13882243-13882351)
chr1 (203-275)||(13882464-13882536)
chr1 (204-275)||(51658854-51658925)
chr1 (19-112)||(1567069-1567166)
[»] chr7 (10 HSPs)
chr7 (13-127)||(48376787-48376902)
chr7 (190-275)||(16060364-16060449)
chr7 (13-127)||(16060512-16060627)
chr7 (203-275)||(9080196-9080268)
chr7 (210-275)||(48376627-48376692)
chr7 (208-275)||(16069010-16069077)
chr7 (23-127)||(4531759-4531865)
chr7 (90-127)||(9080338-9080375)
chr7 (208-249)||(41744134-41744175)
chr7 (95-127)||(37946032-37946064)
[»] scaffold0063 (2 HSPs)
scaffold0063 (190-275)||(28443-28528)
scaffold0063 (89-127)||(28342-28380)
[»] chr8 (6 HSPs)
chr8 (13-127)||(23658526-23658649)
chr8 (206-275)||(23657638-23657707)
chr8 (206-275)||(23658413-23658482)
chr8 (13-127)||(23657751-23657884)
chr8 (208-275)||(17862246-17862313)
chr8 (23-58)||(29293929-29293964)
[»] scaffold0003 (2 HSPs)
scaffold0003 (203-275)||(130623-130695)
scaffold0003 (53-127)||(130795-130870)
[»] scaffold1269 (1 HSPs)
scaffold1269 (13-104)||(1-93)
[»] scaffold0061 (1 HSPs)
scaffold0061 (203-275)||(18099-18171)
[»] scaffold0319 (1 HSPs)
scaffold0319 (13-81)||(13570-13638)
[»] chr2 (1 HSPs)
chr2 (23-127)||(23656470-23656576)
[»] scaffold1043 (1 HSPs)
scaffold1043 (208-275)||(1427-1494)
[»] chr4 (2 HSPs)
chr4 (208-275)||(19728447-19728514)
chr4 (37-106)||(3576240-3576311)
[»] chr5 (3 HSPs)
chr5 (208-270)||(25756783-25756845)
chr5 (208-270)||(25790956-25791018)
chr5 (218-275)||(24832209-24832266)


Alignment Details
Target: scaffold0091 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 29172 - 29057
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  29172 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 29073  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  29072 tgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 28994 - 28907
Alignment:
Q  190 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 28907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 24782 - 24710
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 24710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 14492 - 14378
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14492 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14393  T
Q  112 tgttagtgatgatga 126  Q
    |||||||||||||||    
T  14392 tgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 14307 - 14227
Alignment:
Q  195 gtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  14307 gtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtctaatatacat 14227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 16642412 - 16642300
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  16642412 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 16642313  T
Q  112 tgttagtgatgat 124  Q
    |||||||||||||    
T  16642312 tgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 4712800 - 4712913
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  4712800 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 4712899  T
Q  112 tgttagtgatgatg 125  Q
    ||||||||||||||    
T  4712900 tgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 14062778 - 14062893
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  14062778 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14062877  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||| ||||||||    
T  14062878 tgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 14055037 - 14055152
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  14055037 gagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14055136  T
Q  112 tgttagtgatgatgag 127  Q
    |||||||||| |||||    
T  14055137 tgttagtgataatgag 14055152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 16642195 - 16642123
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642195 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16642123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 4712997 - 4713069
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4712997 atatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtctaatatacat 4713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 14062983 - 14063049
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaat 269  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14062983 atatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaat 14063049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 14055222 - 14055294
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  14055222 atatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtctaatatacat 14055294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
Q  23 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
Q  121 tga 123  Q
    |||    
T  13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 14481800 - 14481851
Alignment:
Q  224 atgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||| |||||||||||||||||| |||||||||| |  |||||||||||    
T  14481800 atgacgatgtataattatgatgatgatttgaatgatgattcctaatatacat 14481851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 14989375 - 14989490
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14989375 gagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14989474  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  14989475 tgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 14980263 - 14980376
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14980263 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14980362  T
Q  112 tgttagtgatgatg 125  Q
    ||||||||||||||    
T  14980363 tgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 14980460 - 14980532
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980460 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 14980532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  90 atgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 51658662 - 51658777
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  51658662 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttata 51658761  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  51658762 tgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 13882243 - 13882351
Alignment:
Q  20 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagt 118  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
Q  119 gatgatgag 127  Q
    |||||||||    
T  13882343 gatgatgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 13882464 - 13882536
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882464 atatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 13882536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 51658854 - 51658925
Alignment:
Q  204 tatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgatatctaatatacat 51658925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
Q  19 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatat 112  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||    
T  1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 48376902 - 48376787
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  48376902 gagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 48376803  T
Q  112 tgttagtgatgatgag 127  Q
    ||||| ||||||||||    
T  48376802 tgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 16060449 - 16060364
Alignment:
Q  190 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060449 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16060364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 16060627 - 16060512
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 111  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  16060627 gagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttata 16060528  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  16060527 tgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 9080268 - 9080196
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9080268 atatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 9080196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 48376692 - 48376627
Alignment:
Q  210 tattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  48376692 tattgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtctaatatacat 48376627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 16069010 - 16069077
Alignment:
Q  208 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  16069010 tatattgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtctaatatacat 16069077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 4531759 - 4531865
Alignment:
Q  23 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |||||| ||| |||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
Q  121 tgatgag 127  Q
    |||||||    
T  4531859 tgatgag 4531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  90 atgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 41744175 - 41744134
Alignment:
Q  208 tatattgactatgagaatgacgacgtataattatgatgatga 249  Q
    ||||||||  |||||||||||||||| |||||||||||||||    
T  41744175 tatattgatgatgagaatgacgacgtctaattatgatgatga 41744134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 37946032 - 37946064
Alignment:
Q  95 aaatgataatgtttatatgttagtgatgatgag 127  Q
    |||||||||||||||||| ||||||||||||||    
T  37946032 aaatgataatgtttatattttagtgatgatgag 37946064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 28443 - 28528
Alignment:
Q  190 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28443 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtctaatatacat 28528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  89 gatgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 23658649 - 23658526
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca--------tgtaatt-aataaatacgatgagaaatgataa 103  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |        ||||||| ||||||||||||||||||| ||||    
T  23658649 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattataa 23658550  T
Q  104 tgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||||    
T  23658549 tgtttatatgttagtgatgatgag 23658526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 23657707 - 23657638
Alignment:
Q  206 tatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23657707 tatatatagactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 23657638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 23658482 - 23658413
Alignment:
Q  206 tatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23658482 tatatatagactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtctaatatacat 23658413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 23657884 - 23657751
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatatta------------------tatacatgtaatt-aataaatacgatga 93  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||                  |||| |||||||| ||||||||||||||    
T  23657884 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatatatatatatatatatgtaattaaataaatacgatga 23657785  T
Q  94 gaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||| ||||||||||||||||||||||||||||    
T  23657784 gaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 17862246 - 17862313
Alignment:
Q  208 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||||| ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||    
T  17862246 tatattgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtctaatatacat 17862313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  23 atgaggaatacataatgtgacgaagagtgatgacga 58  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 130695 - 130623
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130695 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 130623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 130870 - 130795
Alignment:
Q  53 tgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 93 - 1
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataat 104  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  93 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 18099 - 18171
Alignment:
Q  203 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||    
T  18099 atatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatggtatctaatatacat 18171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 13570 - 13638
Alignment:
Q  13 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa 81  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  13570 gagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaa 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 23656470 - 23656576
Alignment:
Q  23 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaa-ttaataaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||| |||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
Q  121 tgatgag 127  Q
    | |||||    
T  23656570 taatgag 23656576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 1427 - 1494
Alignment:
Q  208 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    ||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||||||||||||    
T  1427 tatattgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtctaatatacat 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 19728447 - 19728514
Alignment:
Q  208 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||| || ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||    
T  19728447 tatattaacgatgagaatgataaagtataattatgatgatgatttgaatgatgatgtctaatatacat 19728514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  37 atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt 106  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| || |||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 25756783 - 25756845
Alignment:
Q  208 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaata 270  Q
    ||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
T  25756783 tatattgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcaaata 25756845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 25791018 - 25790956
Alignment:
Q  208 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaata 270  Q
    ||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
T  25791018 tatattgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcgaata 25790956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 24832209 - 24832266
Alignment:
Q  218 atgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 275  Q
    |||||||||| || |||||||||||||||||| |||||||||| |  |||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgattcctaatatacat 24832266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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