View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6424_high_1 (Length: 316)
Name: NF6424_high_1
Description: NF6424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6424_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 28671479 - 28671190
Alignment:
| Q |
17 |
attttgaatatgtttggaatcatatttgtaattttttcttacgatgaaacttgttttgattaataaatgacctacttgtttgattcaaacttaatagttt |
116 |
Q |
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| T |
28671479 |
atttttaatatgtttggaatcatatttgtaattttttcttacgatgaaacttgttttgattaataaatgacctacttgtttgattcaaacttaatagttt |
28671380 |
T |
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| Q |
117 |
tttgtgacttnnnnnnntataattttgtcaataggttgattgtgagacaccagctaataaggacaacnnnnnnntaaaagcttctagttagttgctttat |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28671379 |
tttgtgacttaaaaaaatataattttgtcaataggttgattgtgagacaccagctaataaggacaacaaaaaaataaaagcttctagttagttgctttat |
28671280 |
T |
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| Q |
217 |
taaatccaagttatatcaatagtttagttgtcctatagaaacgttgatcgctactcttttcccttcattaattcctcttcaacccctttg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28671279 |
taaatccaagttatatcaatagtttagttgtcctatagaaacgtttatcgctactcttttccattcattaattcctcttcaacccctttg |
28671190 |
T |
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