View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6424_high_2 (Length: 303)
Name: NF6424_high_2
Description: NF6424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6424_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 3382788 - 3383080
Alignment:
| Q |
1 |
tccacgtgaactccatttatttggtaacaatattaagggataattcataccaatttttggttgttgaactttcaatcattgatatgtcattagacaatta |
100 |
Q |
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| T |
3382788 |
tccacgtgaactccatttatttggtaacaatattaagggataattcataccaatttttggttgttgaactttcaatcattgatatgtcattagacaatta |
3382887 |
T |
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| Q |
101 |
atgactagaaattggcacaatggattgattttaatttcagaattttggatgaagttttttattagaattcataaataacttgagatcgaatatcatggtt |
200 |
Q |
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| T |
3382888 |
atgactagaaattggcacaatgaattgattttgatttcagaattttggatgaagttttttattagaattcataaataacttctgatcgaatatcatggtt |
3382987 |
T |
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| Q |
201 |
aactagcggtttgttcgactgcaacaaataatgaaataagtttcagaagagaattcgcttgcaatcccatgtgcctcattttttatatttgat |
293 |
Q |
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| T |
3382988 |
aactagcggtttgttcgactgcaacaaataatgaaataaatttcagaagagaattcgcttgcaatcccatgtgcctcattttttttatttgat |
3383080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 36487817 - 36487749
Alignment:
| Q |
1 |
tccacgtgaactccatttatttggtaacaatattaagggataattcataccaatttttggttgttgaac |
69 |
Q |
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| T |
36487817 |
tccacatgaactccatttatttggcagcgatgttaagggataattcatatcaatttttgtttgttgaac |
36487749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 36487732 - 36487695
Alignment:
| Q |
59 |
ggttgttgaactttcaatcattgatatgtcattagaca |
96 |
Q |
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|||||||||||||||||||||| ||||| ||||||||| |
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| T |
36487732 |
ggttgttgaactttcaatcattaatatgccattagaca |
36487695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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