View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6424_high_4 (Length: 240)
Name: NF6424_high_4
Description: NF6424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6424_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3382809 - 3382584
Alignment:
| Q |
1 |
aaataaatggagttcacgtggaaaacaaaaagtgtgcatcgcaatctaaacagcttaattgaaattcaacaccacaatcaaaattcaacttatatgaaaa |
100 |
Q |
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| T |
3382809 |
aaataaatggagttcacgtggaaaacaaaaagtgtgcatcgcaatctaaacagcttaattgaagttcaacaccacaatcaaaattcaacttatatgaaaa |
3382710 |
T |
|
| Q |
101 |
ttaaacatttatcttattttgggga-nnnnnnngtgtcaccgttgacagatgttggatacaagggaaataggttaaagtaaaataaaaatacgaggatgc |
199 |
Q |
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| T |
3382709 |
ttaaacatttatcttattttggggattttttttgtgtcaccgttgacagatgttggatacaagggaaataggttaaagtaaaataaaaatacgaggatgc |
3382610 |
T |
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| Q |
200 |
tttgaatgatttattgcgttttaggt |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3382609 |
tttgaatgatttattgcgttttaggt |
3382584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 36487796 - 36488011
Alignment:
| Q |
1 |
aaataaatggagttcacgtggaaaacaaaaagtgtgcatcgcaatctaaacagcttaattgaaattcaacaccacaatcaaaattcaacttatatgaaaa |
100 |
Q |
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|||||||||||||||| |||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||||| |
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| T |
36487796 |
aaataaatggagttcatgtggaaaacaaaaattgtacattgcaatctgaacagcttaattgaaattcaacaccgcaatcgaaattgaatttatatgaaag |
36487895 |
T |
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| Q |
101 |
ttaaaca---tttatcttattttggggannnnnnngtgtcaccgttgacagatgttggatacaagggaaataggttaaagtaaaataaaaatacgaggat |
197 |
Q |
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| T |
36487896 |
gtaaacagcttgtatcttattttgggga-ttttttgtgtcactgttgacagatgttggacacaagggaaataggttaaagcaaaataaaaatatga-gat |
36487993 |
T |
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| Q |
198 |
gctttgaatgatttattg |
215 |
Q |
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|||| ||||||||||||| |
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| T |
36487994 |
gcttcgaatgatttattg |
36488011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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