View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6424_high_5 (Length: 236)

Name: NF6424_high_5
Description: NF6424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6424_high_5
NF6424_high_5
[»] chr6 (8 HSPs)
chr6 (19-227)||(3445319-3445526)
chr6 (163-222)||(21610998-21611057)
chr6 (156-222)||(33629343-33629409)
chr6 (163-222)||(20771614-20771673)
chr6 (47-104)||(2285561-2285618)
chr6 (68-104)||(21611116-21611152)
chr6 (69-104)||(33629460-33629495)
chr6 (163-220)||(2285677-2285734)
[»] chr3 (6 HSPs)
chr3 (154-221)||(51380940-51381007)
chr3 (151-221)||(48723331-48723401)
chr3 (151-216)||(54524927-54524992)
chr3 (163-221)||(39028104-39028162)
chr3 (167-221)||(35442657-35442711)
chr3 (66-102)||(51381055-51381091)
[»] chr1 (6 HSPs)
chr1 (154-221)||(68997-69064)
chr1 (151-221)||(28108100-28108170)
chr1 (45-104)||(36979732-36979791)
chr1 (151-210)||(46878155-46878214)
chr1 (151-216)||(22023123-22023188)
chr1 (48-104)||(25992971-25993027)
[»] chr2 (8 HSPs)
chr2 (163-221)||(27249856-27249914)
chr2 (163-212)||(12037297-12037346)
chr2 (46-102)||(25271846-25271902)
chr2 (151-221)||(5357653-5357723)
chr2 (154-212)||(29699589-29699647)
chr2 (69-104)||(5357571-5357606)
chr2 (162-212)||(42013368-42013418)
chr2 (155-216)||(6069224-6069285)
[»] chr5 (1 HSPs)
chr5 (162-222)||(37283756-37283816)
[»] chr4 (6 HSPs)
chr4 (163-218)||(21512002-21512057)
chr4 (151-221)||(18489601-18489671)
chr4 (156-221)||(12868411-12868476)
chr4 (154-221)||(24699455-24699522)
chr4 (151-222)||(9672095-9672166)
chr4 (163-222)||(28752839-28752898)
[»] chr8 (7 HSPs)
chr8 (154-222)||(42456934-42457002)
chr8 (155-212)||(9780358-9780415)
chr8 (163-221)||(38753831-38753889)
chr8 (66-104)||(41581146-41581184)
chr8 (172-216)||(16677140-16677184)
chr8 (154-222)||(40832890-40832958)
chr8 (151-203)||(5920871-5920923)
[»] chr7 (3 HSPs)
chr7 (50-104)||(28443765-28443819)
chr7 (152-217)||(5897648-5897713)
chr7 (185-221)||(2729919-2729955)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 3445319 - 3445526
Alignment:
Q  19 ggattaaggtctcgacccatatctccatgaaaattgttgttcatgcctcaaacaaggctgaaacacattagaaaaagacgtaaatgcttattcttcacag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3445319 ggattaaggtctcgacccatatctccatgaaaattgttgttcatacctcaaacaaggctgaaacacattagaaaaagacgtaaatgcttattcttcacag 3445418  T
Q  119 ttaactgtcgatgatgnnnnnnnnnaagaaggctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattc 218  Q
    |||||||| |||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3445419 ttaactgttgatgatg-ttttttttaagaaggctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattc 3445517  T
Q  219 ttctctctc 227  Q
    |||||||||    
T  3445518 ttctctctc 3445526  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 21611057 - 21610998
Alignment:
Q  163 ttatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttct 222  Q
    ||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  21611057 ttatattgataaattactagtattttctagtattgagtgaagtgtgaacaacattcttct 21610998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 33629409 - 33629343
Alignment:
Q  156 gatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttct 222  Q
    ||||| ||||||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  33629409 gatgagattatattggtaaattactattgtttcctagcattgagtgaagtgtgaacaacattcttct 33629343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 20771673 - 20771614
Alignment:
Q  163 ttatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttct 222  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||    
T  20771673 ttatattgataaatttctagtattttctagcattgagtgaagtgtgaacaacatccttct 20771614  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 2285561 - 2285618
Alignment:
Q  47 gaaaattgttgttcatgcctcaaacaaggctgaaacacattagaaaaagacgtaaatg 104  Q
    |||||||| ||||||  | |||||||||| ||||||||||||||||||||||||||||    
T  2285561 gaaaattgctgttcacacttcaaacaaggttgaaacacattagaaaaagacgtaaatg 2285618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 21611152 - 21611116
Alignment:
Q  68 aaacaaggctgaaacacattagaaaaagacgtaaatg 104  Q
    ||||| |||||||||||||||||||||||||||||||    
T  21611152 aaacatggctgaaacacattagaaaaagacgtaaatg 21611116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 33629495 - 33629460
Alignment:
Q  69 aacaaggctgaaacacattagaaaaagacgtaaatg 104  Q
    |||||||||||||||||| |||||||||||||||||    
T  33629495 aacaaggctgaaacacatcagaaaaagacgtaaatg 33629460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 2285677 - 2285734
Alignment:
Q  163 ttatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattctt 220  Q
    ||||||||||||||||  | | |||| |||||||  ||||||||||||||||||||||    
T  2285677 ttatattgataaattatcaatgtttcatagcattaagtgaagtgtgaacaacattctt 2285734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 51381007 - 51380940
Alignment:
Q  154 ccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  51381007 ccgatgatgttatattgataaattactagtgtttcctagcattgagtgaagtgtgaacaacattcttc 51380940  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 48723401 - 48723331
Alignment:
Q  151 ctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    |||||||||| ||||||||| |||||||| ||| |||| |||||||| |||||||||||||||||||||||    
T  48723401 ctgccgatgagattatattggtaaattaccagtgtttcatagcattgagtgaagtgtgaacaacattcttc 48723331  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 54524992 - 54524927
Alignment:
Q  151 ctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacat 216  Q
    ||||||||||  |||||||  ||||| |||||||||||||| ||||| ||||||||||||||||||    
T  54524992 ctgccgatgaggttatattagtaaataactagtatttcctaacattgagtgaagtgtgaacaacat 54524927  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 39028162 - 39028104
Alignment:
Q  163 ttatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    |||||||  |||||||||||| ||| |||||||||  ||||||||||||||||||||||    
T  39028162 ttatatttgtaaattactagtgttttctagcattgattgaagtgtgaacaacattcttc 39028104  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 35442711 - 35442657
Alignment:
Q  167 attgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    |||| |||||||  ||| ||| ||||||||| |||||||||||||||||||||||    
T  35442711 attggtaaattatcagtgttttctagcattgagtgaagtgtgaacaacattcttc 35442657  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 51381091 - 51381055
Alignment:
Q  66 tcaaacaaggctgaaacacattagaaaaagacgtaaa 102  Q
    ||||||||||||||||||||  |||||||||||||||    
T  51381091 tcaaacaaggctgaaacacaccagaaaaagacgtaaa 51381055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 68997 - 69064
Alignment:
Q  154 ccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    |||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||    
T  68997 ccgatgatgttatattgataaattactagtgtgtcctagcattgagtgaagtgtgaacaacattcttc 69064  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 28108170 - 28108100
Alignment:
Q  151 ctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    ||||||||||  |||||||| |||||||||||| |||||||| | || |||||||||||||||||||||||    
T  28108170 ctgccgatgaagttatattggtaaattactagtgtttcctagtactgagtgaagtgtgaacaacattcttc 28108100  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 36979732 - 36979791
Alignment:
Q  45 atgaaaattgttgttcatgcctcaaacaaggctgaaacacattagaaaaagacgtaaatg 104  Q
    |||||||||||| |||| || || ||||| |||||||||||  |||||||||||||||||    
T  36979732 atgaaaattgtttttcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatg 36979791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 46878214 - 46878155
Alignment:
Q  151 ctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaa 210  Q
    |||||||| | |||||||| |||||||| | || ||||||||||||| ||||||||||||    
T  46878214 ctgccgataagattatatttataaattattggtgtttcctagcattgagtgaagtgtgaa 46878155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 22023188 - 22023123
Alignment:
Q  151 ctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacat 216  Q
    ||||||||||  |||||| | ||||||||| || ||| | ||||||| ||||||||||||||||||    
T  22023188 ctgccgatgaggttatataggtaaattactggtgttttccagcattgagtgaagtgtgaacaacat 22023123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 25992971 - 25993027
Alignment:
Q  48 aaaattgttgttcatgcctcaaacaaggctgaaacacattagaaaaagacgtaaatg 104  Q
    ||||||| ||||||  | ||||||||| |||||| |||| |||||||||||||||||    
T  25992971 aaaattgatgttcacacttcaaacaagtctgaaatacatcagaaaaagacgtaaatg 25993027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 27249856 - 27249914
Alignment:
Q  163 ttatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  27249856 ttatattgataaattactagtgtttcctaacattgagtgaagtgtgaacaacattcttc 27249914  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 12037346 - 12037297
Alignment:
Q  163 ttatattgataaattactagtatttcctagcattgtgtgaagtgtgaaca 212  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||||||    
T  12037346 ttatattgataaattactggtgtttcctagcattgagtgaagtgtgaaca 12037297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 25271902 - 25271846
Alignment:
Q  46 tgaaaattgttgttcatgcctcaaacaaggctgaaacacattagaaaaagacgtaaa 102  Q
    |||||||||||||| |  | ||||||||||||||||||||| |||||||||||||||    
T  25271902 tgaaaattgttgtttacacttcaaacaaggctgaaacacatcagaaaaagacgtaaa 25271846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 5357653 - 5357723
Alignment:
Q  151 ctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    ||||||||||  |||||||| |||||||||||| |||   | ||||| |||||||||||||||||||||||    
T  5357653 ctgccgatgaggttatattggtaaattactagtgtttttcaacattgagtgaagtgtgaacaacattcttc 5357723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 29699589 - 29699647
Alignment:
Q  154 ccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaaca 212  Q
    |||||||  |||||||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  29699589 ccgatgaggttatattggtaaattactagtgtttcctaacattgagtgaagtgtgaaca 29699647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 5357571 - 5357606
Alignment:
Q  69 aacaaggctgaaacacattagaaaaagacgtaaatg 104  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5357571 aacaaggctgaaacacactagaaaaagacgtaaatg 5357606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 42013418 - 42013368
Alignment:
Q  162 attatattgataaattactagtatttcctagcattgtgtgaagtgtgaaca 212  Q
    |||| |||||||||||||| || ||||||||||||| |||||| |||||||    
T  42013418 attaaattgataaattactggtgtttcctagcattgagtgaagcgtgaaca 42013368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 6069224 - 6069285
Alignment:
Q  155 cgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacat 216  Q
    |||||| ||||||||||||||||||| | |||||||   ||||  |||||||||||||||||    
T  6069224 cgatgagattatattgataaattactgggatttccttatattgaatgaagtgtgaacaacat 6069285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 37283756 - 37283816
Alignment:
Q  162 attatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttct 222  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||    
T  37283756 attatattgataaattactcgtgtttcctagcattgagtgaagtgtgaacaacatttttct 37283816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 21512057 - 21512002
Alignment:
Q  163 ttatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattc 218  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  21512057 ttatattgataaattagtagtgtttcctagcattgagtgaagtgtgaacaacattc 21512002  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 18489671 - 18489601
Alignment:
Q  151 ctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    |||||||||| ||||||||| |||||||||||| |||| || ||||| ||||||| |||||||||||||||    
T  18489671 ctgccgatgaaattatattggtaaattactagtgtttcttaacattgagtgaagtatgaacaacattcttc 18489601  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 12868476 - 12868411
Alignment:
Q  156 gatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    ||||| |||||||||||||||||||| | ||| ||| ||||| |||||||||||||||||||||||    
T  12868476 gatgagattatattgataaattactaatgttttctaacattgagtgaagtgtgaacaacattcttc 12868411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 24699455 - 24699522
Alignment:
Q  154 ccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    |||||||| |||| |||||||||||||||| |||||||| ||||  ||||||||||| ||||||||||    
T  24699455 ccgatgatgttatgttgataaattactagtgtttcctagaattgattgaagtgtgaagaacattcttc 24699522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 9672166 - 9672095
Alignment:
Q  151 ctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttct 222  Q
    ||||||||||  ||||||||  ||||||| | ||||||||||||||  ||||||| ||||||||||||||||    
T  9672166 ctgccgatgaagttatattgggaaattaccaatatttcctagcattaagtgaagtatgaacaacattcttct 9672095  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 28752898 - 28752839
Alignment:
Q  163 ttatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttct 222  Q
    |||||||| ||||||| | ||||||| || ||||| ||||||||||||||||||| ||||    
T  28752898 ttatattggtaaattaatggtatttcttaccattgagtgaagtgtgaacaacattattct 28752839  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 42456934 - 42457002
Alignment:
Q  154 ccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttct 222  Q
    |||||||  |||||||| ||||||||| || ||||||||||||  ||||||||||||||||||||||||    
T  42456934 ccgatgaggttatattggtaaattactggtgtttcctagcattaagtgaagtgtgaacaacattcttct 42457002  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 9780415 - 9780358
Alignment:
Q  155 cgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaaca 212  Q
    ||||||| ||||||||||||||||||  ||||| ||||||||| ||||||||||||||    
T  9780415 cgatgatgttatattgataaattacttatattttctagcattgagtgaagtgtgaaca 9780358  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 38753831 - 38753889
Alignment:
Q  163 ttatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    ||||||||||||||||||| | |||| |||||||| || |||||||| |||||||||||    
T  38753831 ttatattgataaattactaatgtttcttagcattgagtcaagtgtgagcaacattcttc 38753889  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 41581184 - 41581146
Alignment:
Q  66 tcaaacaaggctgaaacacattagaaaaagacgtaaatg 104  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  41581184 tcaaacaaggctgaaacacactagaaaaagacgtaaatg 41581146  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 16677140 - 16677184
Alignment:
Q  172 taaattactagtatttcctagcattgtgtgaagtgtgaacaacat 216  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||    
T  16677140 taaattactggtgtttcctagcattgagtgaagtgtgaacaacat 16677184  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 40832958 - 40832890
Alignment:
Q  154 ccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacattcttct 222  Q
    |||||||  |||||||| ||||||||||||||||||||  |||  ||||||||||||||| ||| ||||    
T  40832958 ccgatgaggttatattggtaaattactagtatttcctaatatttagtgaagtgtgaacaatattattct 40832890  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 5920871 - 5920923
Alignment:
Q  151 ctgccgatgatattatattgataaattactagtatttcctagcattgtgtgaa 203  Q
    |||||||||| ||||||||| |||| |||| || ||||||||||||| |||||    
T  5920871 ctgccgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 5920923  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 28443819 - 28443765
Alignment:
Q  50 aattgttgttcatgcctcaaacaaggctgaaacacattagaaaaagacgtaaatg 104  Q
    ||||||||||||  | |||||||||||||||||||| ||||||||||||||||||    
T  28443819 aattgttgttcacacttcaaacaaggctgaaacacactagaaaaagacgtaaatg 28443765  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 5897648 - 5897713
Alignment:
Q  152 tgccgatgatattatattgataaattactagtatttcctagcattgtgtgaagtgtgaacaacatt 217  Q
    |||||||||  |||||||||||||||||| || |||| |||||| | ||||| |||||||||||||    
T  5897648 tgccgatgaagttatattgataaattactggtgtttcttagcatcgagtgaaatgtgaacaacatt 5897713  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 2729919 - 2729955
Alignment:
Q  185 tttcctagcattgtgtgaagtgtgaacaacattcttc 221  Q
    ||||||||||||| |||||||||||||||||||||||    
T  2729919 tttcctagcattgagtgaagtgtgaacaacattcttc 2729955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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