View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6424_low_3 (Length: 248)
Name: NF6424_low_3
Description: NF6424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6424_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 35370872 - 35370648
Alignment:
| Q |
9 |
agcatagggagcattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgataga |
108 |
Q |
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| T |
35370872 |
agcatagagaacattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgataga |
35370773 |
T |
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| Q |
109 |
tggaattaaatgttgttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatctac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35370772 |
tggaattaaatgttgttaaatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatataacatctgtggatttatctac |
35370673 |
T |
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| Q |
209 |
cgtaccataaatgtagtcatacatt |
233 |
Q |
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||||||||||||||||||||||||| |
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| T |
35370672 |
cgtaccataaatgtagtcatacatt |
35370648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 35381428 - 35381219
Alignment:
| Q |
20 |
cattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatagatggaattaaat |
119 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||| | |
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| T |
35381428 |
cattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagtaaagcctaaacgtaattgatagatggaactaagt |
35381329 |
T |
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| Q |
120 |
gttgttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatctaccgtaccataaa |
219 |
Q |
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| T |
35381328 |
gtagttaaatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggcttcatatgtagcatctgtggatttatctacggtgccataaa |
35381229 |
T |
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| Q |
220 |
tgtagtcata |
229 |
Q |
| |
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|||||||||| |
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| T |
35381228 |
tgtagtcata |
35381219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 35355425 - 35355201
Alignment:
| Q |
9 |
agcatagggagcattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgataga |
108 |
Q |
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||||||| || ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| | |||||| | |
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| T |
35355425 |
agcatagagaacattgtaaatggccacattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaa |
35355326 |
T |
|
| Q |
109 |
tggaattaaatgttgttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatctac |
208 |
Q |
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| |||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| || |
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| T |
35355325 |
ttgaatcaagtgtagttaaatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatgtagcatctgtggatttatgcac |
35355226 |
T |
|
| Q |
209 |
cgtaccataaatgtagtcatacatt |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
35355225 |
tgtaccataaatgtagtcatacatt |
35355201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 19685406 - 19685197
Alignment:
| Q |
20 |
cattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatagatggaattaaat |
119 |
Q |
| |
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||||||||| ||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||| |||||||||| |||| ||||||||| || | |
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| T |
19685406 |
cattgtaaaaggccacattaaattgagataccatttcgatgtttgagggttggaggctaaggaagcaagccctaaacgtagttgaaagatggaatcaagt |
19685307 |
T |
|
| Q |
120 |
gttgttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatctaccgtaccataaa |
219 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| | |||| || | | | ||||||| || |||||| |||| |||| || |||||||||| |
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| T |
19685306 |
gttgttaaatgtgttaagtgcaccacatctggtgactcctcttgtctcttcgaacaagcttcatatgtagcatctgaggatgtatccacagtaccataaa |
19685207 |
T |
|
| Q |
220 |
tgtagtcata |
229 |
Q |
| |
|
||| |||||| |
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|
| T |
19685206 |
tgtggtcata |
19685197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 19629248 - 19629454
Alignment:
| Q |
23 |
tgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatagatggaattaaatgtt |
122 |
Q |
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|||||| ||||||||||||| || ||||||||||| |||||||||||||| ||||| |||||||| ||||| |||| |||| |||| |||| || |||| |
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| T |
19629248 |
tgtaaaaggccacattaaattgagataccatttagaagtttgagggttggaggctaaggaagcaaaccctaagcgtagttgaaagatagaatcaagtgtt |
19629347 |
T |
|
| Q |
123 |
gttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatctaccgtaccataaatgt |
222 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||| | |||| |||| | | ||||||| || ||||||||||| ||| || ||||||||||||| |
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| T |
19629348 |
gttaaatgtgttaagtgcaccacatctggtgattcctcttgtctcttcaaacaagattcatatgtagcatctgtggatgcatccactgtaccataaatgt |
19629447 |
T |
|
| Q |
223 |
agtcata |
229 |
Q |
| |
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||||||| |
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| T |
19629448 |
agtcata |
19629454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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