View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6425_high_1 (Length: 550)

Name: NF6425_high_1
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6425_high_1
NF6425_high_1
[»] chr7 (1 HSPs)
chr7 (1-532)||(10593089-10593617)
[»] chr5 (10 HSPs)
chr5 (96-285)||(14375501-14375686)
chr5 (96-285)||(41449536-41449721)
chr5 (96-285)||(41436323-41436508)
chr5 (97-285)||(14238453-14238637)
chr5 (396-531)||(38271740-38271873)
chr5 (396-525)||(38273423-38273550)
chr5 (426-522)||(38277976-38278078)
chr5 (384-470)||(38276852-38276936)
chr5 (368-469)||(38278953-38279052)
chr5 (490-531)||(38270557-38270598)
[»] chr8 (4 HSPs)
chr8 (96-251)||(32119103-32119255)
chr8 (366-423)||(32119955-32120012)
chr8 (391-512)||(26577116-26577237)
chr8 (17-101)||(32118988-32119075)


Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 10593617 - 10593089
Alignment:
Q  1 tagacccacaatgccttcaaagatcagaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatga 100  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10593617 tagacccacaatgccttaaaagatcaaaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatga 10593518  T
Q  101 ttccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagcagcag 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10593517 ttccaggtggaatcgatatcaagaatatcaaagtaaaggaaaatgtgatcaaagacgacatgtctaaactgaaacatatataaccattccgtagcagcag 10593418  T
Q  201 caatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaattaacatgaaatcttt 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10593417 caatgttcaactttggccgagaatacccattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaattaacatgaaatcttt 10593318  T
Q  301 acgaactataggttgggaaaacacaaaccggtaactagccaacttgtttcttgagaaatggtctgtgtatccatgtccctctttcactatttctgtttat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    |||||| ||||||    
T  10593317 acgaactataggttgggaaaacacaaaccggtaactagccaacttgtttcttgagaaatggtctgtgtatccatctccctctt----tatttcagtttat 10593222  T
Q  401 tttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggtttcattttattcaatacaaatga-ttttga 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||||| ||||||    
T  10593221 tttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcgtataattaatttcattttattgaatacaaatgatttttga 10593122  T
Q  500 tgatatttgagactaatttcatgacaaaaagtt 532  Q
    |||||||||||||||||||||||||||||||||    
T  10593121 tgatatttgagactaatttcatgacaaaaagtt 10593089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 7e-69; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 14375686 - 14375501
Alignment:
Q  96 tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc 195  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||    ||||||||| ||||    
T  14375686 tatgattccaggtggaatcgatatcaagaatatcaaagaaaaggcaaatgtgatcaaagacaacatatctaaacggaaacat----aaccattccatagc 14375591  T
Q  196 agcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat 285  Q
    |||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  14375590 agcagcaatgttgaactttggccgagaatacccatcaatcagtttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaat 14375501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 41449536 - 41449721
Alignment:
Q  96 tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc 195  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||| |||||  ||||| |||| ||||| | ||| |    ||||||||||| ||||    
T  41449536 tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaacgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc 41449631  T
Q  196 agcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat 285  Q
    ||||||||| || ||||||||||||||||||| || | |||||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  41449632 agcagcaatattgaactttggccgagaatacccatcagtcagtttcatgtttgtttcatgaaatctagactgttgatcaaagcttctaat 41449721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 41436323 - 41436508
Alignment:
Q  96 tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc 195  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||  ||||| |||| ||||| | ||| |    ||||||||||| ||||    
T  41436323 tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaatgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc 41436418  T
Q  196 agcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat 285  Q
    |||| |||| || ||||||||||||||||||| || | |||||||||| |||||||||| |||||| ||| |||||||||||||||||||    
T  41436419 agcaacaatattgaactttggccgagaatacccatcagtcagtttcatgtttgtttcataaaatctagactgttgatcaaagcttctaat 41436508  T

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Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 97 - 285
Target Start/End: Original strand, 14238453 - 14238637
Alignment:
Q  97 atgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagca 196  Q
    ||||||||||||||||||||||||||||||  ||| | |||||||||| ||||  ||||| |||| ||||| |  ||| ||    ||||||||| |||||    
T  14238453 atgattccaggtggaatcgatatcaagaatgccaaggaaaaggcaaatatgatggaagacaacatatctaagcgtaaagat----aaccattccatagca 14238548  T
Q  197 gcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat 285  Q
    |||| |||||| || |||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14238549 gcagaaatgttgaaatttggccgagaatacccatcagtcagtttcatatttgtttcatgaaatcttgactgttgatcaaagcttctaat 14238637  T

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Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 396 - 531
Target Start/End: Original strand, 38271740 - 38271873
Alignment:
Q  396 tttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggtttcattttattcaatacaaatgatt 495  Q
    ||||||||||||||||||||||||| ||  ||||||||||| | ||| | |||| || |||||||| |||||||||| ||||||||||||||||||||||    
T  38271740 tttattttgtcatgtatctttaattctt--tttagactagagttcaccggcattataaggattcatgtaattggttttattttattcaatacaaatgatt 38271837  T
Q  496 ttgatgatatttgagactaatttcatgacaaaaagt 531  Q
    |||||||| |||||||| |||||||||||| |||||    
T  38271838 ttgatgatgtttgagacaaatttcatgacagaaagt 38271873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 396 - 525
Target Start/End: Original strand, 38273423 - 38273550
Alignment:
Q  396 tttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggtttcattttattcaatacaaatgatt 495  Q
    ||||||||||||||||||||||||| ||  ||||| ||||||| ||| |||||| ||| ||||| |||||||||||||||||||||||||||||||||||    
T  38273423 tttattttgtcatgtatctttaattatt--tttagcctagaatgcacagacattatagagattcgtataattggtttcattttattcaatacaaatgatt 38273520  T
Q  496 ttgatgatatttgagactaatttcatgaca 525  Q
    ||| |||| |||||| | ||||||||||||    
T  38273521 ttggtgatgtttgaggcaaatttcatgaca 38273550  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 426 - 522
Target Start/End: Original strand, 38277976 - 38278078
Alignment:
Q  426 tttagactagaatacacggacattgtagggattc----atataattggtttcattttattca--atacaaatgattttgatgatatttgagactaatttc 519  Q
    |||||||||||||||||||||||| |||||||||    |||||||| |||||||||||||||  |||||||||||||||||||  |||||||| ||||||    
T  38277976 tttagactagaatacacggacattatagggattcatatatataatttgtttcattttattcaatatacaaatgattttgatgacgtttgagacaaatttc 38278075  T
Q  520 atg 522  Q
    |||    
T  38278076 atg 38278078  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 38276852 - 38276936
Alignment:
Q  384 tcactatttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataattggt 470  Q
    ||||||||||| ||||||||||||||||| ||||||| ||  |||||| | ||||||| ||||||| || |||||||||| ||||||    
T  38276852 tcactatttctttttattttgtcatgtatatttaattatt--tttagatttgaatacatggacattatatggattcatatgattggt 38276936  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 469
Target Start/End: Original strand, 38278953 - 38279052
Alignment:
Q  368 tatccatgtccctctttcactatttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatataatt 467  Q
    |||| ||||| ||| || ||||||||| |||||||| |||||||||||| ||| ||  |||||| ||||||||||  || |  |||||||||||||||||    
T  38278953 tatcaatgtctctcctttactatttctttttattttatcatgtatcttttattatt--tttagaatagaatacaccaacgtcatagggattcatataatt 38279050  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 38270557 - 38270598
Alignment:
Q  490 atgattttgatgatatttgagactaatttcatgacaaaaagt 531  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  38270557 atgattttgatgatgtttgagacaaatttcatgacagaaagt 38270598  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 32119103 - 32119255
Alignment:
Q  96 tatgattccaggtggaatc-gatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtag 194  Q
    |||||||||||||||| || ||||||||||||||||||| |||| ||||| ||||||||||| |||| |||| || || ||    ||||||||||| |||    
T  32119103 tatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctatacggagac----ataaccattccatag 32119198  T
Q  195 cagcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgttt 251  Q
    ||||||||||||| |||||||||  |||||| | ||||||||| ||||||| |||||    
T  32119199 cagcagcaatgttgaactttggcaaagaatatccattaatcaggttcatatatgttt 32119255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 32119955 - 32120012
Alignment:
Q  366 tgtatccatgtccctctttcactatttctgtttattttgtcatgtatctttaattttt 423  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  32119955 tgtatccatgtctctctttcactatttctttttattttgtcatgtatctttaattttt 32120012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 391 - 512
Target Start/End: Original strand, 26577116 - 26577237
Alignment:
Q  391 ttctgtttattttgtcatgtatctttaatttttaatttagactagaatacacggacattgtagggattcatat--aattggtttcattttattcaataca 488  Q
    |||| |||||||||||||| |||||||||| ||  ||||||||| |||||||  ||||  || |||||| |||  |||||| ||||||| ||||||||||    
T  26577116 ttctttttattttgtcatgcatctttaattatt--tttagactaaaatacacatacatcatatggattcttatttaattggcttcatttgattcaataca 26577213  T
Q  489 aatgattttgatgatatttgagac 512  Q
    | |||||||||||||| |||||||    
T  26577214 attgattttgatgatagttgagac 26577237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 32118988 - 32119075
Alignment:
Q  17 tcaaagatcagaaaaattacact---gagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatgat 101  Q
    ||||| ||||||||||| |||||   |||| ||||||||||| ||||| ||| |||||| |  |||||| ||||||| ||||||||||    
T  32118988 tcaaaaatcagaaaaatgacactaaggagagacaattatgcctaacttctcaatacacaagcagagtaaattttgattgatatatgat 32119075  T

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