View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6425_high_3 (Length: 397)

Name: NF6425_high_3
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6425_high_3
NF6425_high_3
[»] chr8 (5 HSPs)
chr8 (43-381)||(42555169-42555506)
chr8 (185-381)||(42091750-42091945)
chr8 (55-141)||(41841250-41841336)
chr8 (55-140)||(42091945-42092030)
chr8 (43-143)||(42220931-42221030)
[»] chr4 (2 HSPs)
chr4 (55-141)||(11652490-11652576)
chr4 (55-141)||(3461240-3461326)
[»] chr5 (1 HSPs)
chr5 (55-143)||(1716550-1716637)
[»] chr2 (3 HSPs)
chr2 (89-141)||(2841150-2841202)
chr2 (43-143)||(8988376-8988476)
chr2 (55-140)||(9023371-9023456)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 43 - 381
Target Start/End: Original strand, 42555169 - 42555506
Alignment:
Q  43 caaaagaccaaaaaaggtatgagttgaaagttgtgctagcttcaggttttatatctcacatccactcacttgctttcttaaactatcgatgtgggactat 142  Q
    ||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42555169 caaaagatcaagaaaggtatgagttgaaagttgagctaccttcaggttttatatatcacatccactcacttgctttcttaaactatcgatgtgggactat 42555268  T
Q  143 tctgcaaccgcttggtatgtatatacgcatgtgtttgcgcatttaataggcagaggatatgtggtttggagcacccacccacccaccaaggagaatctca 242  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42555269 tctgcaaccgcttggtatgtatatacgcatgtgtttacgcatttaataggcagaggatatgtggtttggagcacccacccacccaccaaggagaa-ctca 42555367  T
Q  243 tgtcaataaaacatcttacagatttggagaagctctccatacaaaattgttggtcaatcgcttgttgaatgaaaagggaggaattaagcagaacacatat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42555368 tgtcaataaaacatcttacagatttggagaagctctccatacaaaattgttggtcaatcgcttgttgaatgaaaagggaggaattaagcagaacacatat 42555467  T
Q  343 tcattttctgccaattccaaacacattgtactcaacttg 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42555468 tcattttctgccaattccaaacacattgtactcaacttg 42555506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 185 - 381
Target Start/End: Complemental strand, 42091945 - 42091750
Alignment:
Q  185 ttaataggcagaggatatgtggtttggagcacccacccacccaccaaggagaatctcatgtcaataaaacatcttacagatttggagaagctctccatac 284  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42091945 ttaataggcagatgatatgtggtttggagcacccacccacccaccaaggagaa-ctcatgtcaataaaacatcttacagatttggagaagctctccatac 42091847  T
Q  285 aaaattgttggtcaatcgcttgttgaatgaaaagggaggaattaagcagaacacatattcattttctgccaattccaaacacattgtactcaacttg 381  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42091846 aaaattgttggtcaatcgcttgttgaatgaaaagggagaaattaagcagaacacatattcattttctgccaattccaaacacattgtactcaacttg 42091750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 41841250 - 41841336
Alignment:
Q  55 aaaggtatgagttgaaagttgtgctagcttcaggttttatatctcacatccactcacttgctttcttaaactatcgatgtgggacta 141  Q
    |||||||||||||||||| || | | ||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  41841250 aaaggtatgagttgaaagatgggttggcttctgcttttatatctcacatccactcacttgctttcttaaacgagcgatgtgggacta 41841336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 42092030 - 42091945
Alignment:
Q  55 aaaggtatgagttgaaagttgtgctagcttcaggttttatatctcacatccactcacttgctttcttaaactatcgatgtgggact 140  Q
    ||||||||||||| |||| || | | ||||| ||||||||||||||  |||||||| |||||||||| ||||| ||||||||||||    
T  42092030 aaaggtatgagtttaaagatgagtttgcttctggttttatatctcaggtccactcagttgctttcttgaactaccgatgtgggact 42091945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 42220931 - 42221030
Alignment:
Q  43 caaaagaccaaaaaaggtatgagttgaaagttgtgctagcttcaggttttatatctcacatccactcacttgctttcttaaactatcgatgtgggactat 142  Q
    ||||||||| ||||| |||||||||||||| | |||| || || | |||||||||||| |||||| ||||| ||||||  ||||| ||||||||||||||    
T  42220931 caaaagaccgaaaaatgtatgagttgaaagctatgctcgcctctgcttttatatctcatatccac-cacttactttctagaactagcgatgtgggactat 42221029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 11652490 - 11652576
Alignment:
Q  55 aaaggtatgagttgaaagttgtgctagcttcaggttttatatctcacatccactcacttgctttcttaaactatcgatgtgggacta 141  Q
    ||||||||||||| |||| || | | ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  11652490 aaaggtatgagttaaaagatgggttggcttctggttttatatctcacatccactcacttgctttcttaaacgagcgatgtgggacta 11652576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 3461240 - 3461326
Alignment:
Q  55 aaaggtatgagttgaaagttgtgctagcttcaggttttatatctcacatccactcacttgctttcttaaactatcgatgtgggacta 141  Q
    |||||||||| |||||||   |||| ||||  ||||||||||||| |||||||||||||||||||||  || | |||||||||||||    
T  3461240 aaaggtatgaattgaaagagatgctcgcttatggttttatatctcccatccactcacttgctttcttccacaagcgatgtgggacta 3461326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 1716550 - 1716637
Alignment:
Q  55 aaaggtatgagttgaaagttgtgctagcttcaggttttatatctcacatccactcacttgctttcttaaactatcgatgtgggactatt 143  Q
    ||||||||||||| |||| ||  || |||||   ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  1716550 aaaggtatgagttaaaagatgcactcgcttcttattttatatctcacatccactcacttgctttc-tgaactagcgatgtgggactatt 1716637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 2841150 - 2841202
Alignment:
Q  89 ttttatatctcacatccactcacttgctttcttaaactatcgatgtgggacta 141  Q
    ||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  2841150 ttttatatctcacatccactcacttgctttcttcaacaaccgatgtgggacta 2841202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 8988476 - 8988376
Alignment:
Q  43 caaaagaccaaaaaaggtatgagttgaaagttgtgctagcttcaggttttatatctcacatccactcacttgctttcttaaactatcgatgtgggactat 142  Q
    |||||| |||| || ||||| ||||||||| ||  || ||||  | |||||||| ||||||||  |||||||||||||| |||  |||||||||||||||    
T  8988476 caaaaggccaagaatggtataagttgaaagatgaactcgcttatgcttttatatatcacatcccttcacttgctttcttgaacagtcgatgtgggactat 8988377  T
Q  143 t 143  Q
    |    
T  8988376 t 8988376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 9023456 - 9023371
Alignment:
Q  55 aaaggtatgagttgaaagttgtgctagcttcaggttttatatctcacatccactcacttgctttcttaaactatcgatgtgggact 140  Q
    |||||||||||||||||||||  || ||||  | |||||||| |||||||   ||||||| |||||| ||| | ||||||||||||    
T  9023456 aaaggtatgagttgaaagttggactcgcttatgcttttatatatcacatctcttcacttgatttcttgaacaaccgatgtgggact 9023371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University