View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6425_high_4 (Length: 376)
Name: NF6425_high_4
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6425_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 48833721 - 48834080
Alignment:
| Q |
1 |
agagagactaacatatattatatatttatctatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcat |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48833721 |
agagagactaacatatattatatatttatttatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcat |
48833820 |
T |
|
| Q |
101 |
tggcttcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatga |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48833821 |
tggcatcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatga |
48833920 |
T |
|
| Q |
201 |
attttactttaagactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttgatacctaatcgtgattgtccatcaaatgccgagttc |
300 |
Q |
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| T |
48833921 |
attttactttaagactttctttgatgctggagagtttgaatttggtttgtcaacggtgtctttgatacctaatcctgattgtccaccaaatgccgagttc |
48834020 |
T |
|
| Q |
301 |
attgatacatacactcactcagcagagggtgcaccaatccccttgaagaatgcagtttgt |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48834021 |
attgatacatacactcactcagcagagggtgcaccaatccccttgaagaatgcagtttgt |
48834080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 40 - 361
Target Start/End: Complemental strand, 48816738 - 48816417
Alignment:
| Q |
40 |
agctgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgta |
139 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||| | | |||||| | || || | |||||||||||||| || || ||||| |
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| T |
48816738 |
agctgggccaactggaagtttcatataggatttgatgtacgagctggtatagtgatatcacttgcatctatttacgatctagagaaacataagtctcgcc |
48816639 |
T |
|
| Q |
140 |
gagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttgg |
239 |
Q |
| |
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| ||| | |||||||| |||||||| || || |||||||| || ||||| ||| | || || |||||||||||||||||||||||| ||||||||||||| |
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| T |
48816638 |
gtgtactctacaaaggctacatttccgagctatttgtgccttatcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttgg |
48816539 |
T |
|
| Q |
240 |
atttggtttgtcaacggtgtctttgatacctaatcgtgattgtccatcaaatgccgagttcattgatacatacactcactcagcagagggtgcaccaatc |
339 |
Q |
| |
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| T |
48816538 |
atttggtctgtcaacggtgtctttgatacctaatcgtgattgtccaccacatgctcagttcattgatacatacattcactcggctgatggtacaccaagc |
48816439 |
T |
|
| Q |
340 |
cccttgaagaatgcagtttgtg |
361 |
Q |
| |
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| |||||||||||| |||||| |
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| T |
48816438 |
ctattgaagaatgcaatttgtg |
48816417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 43 - 361
Target Start/End: Complemental strand, 48790434 - 48790116
Alignment:
| Q |
43 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| || ||||||| | || || | || |||||||||||||||| || |||||||| |
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| T |
48790434 |
tgggccaattggaagtttcatataggatttgatgtacgagctggtattgtaatatcccttgcatctatttatgatctagagaagcacatatatcgtagag |
48790335 |
T |
|
| Q |
143 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
242 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||||||||||||||||| | || ||||||||||||||||| || || ||| |||| ||||||||||| |
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|
| T |
48790334 |
tattatacaaagggtacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatt |
48790235 |
T |
|
| Q |
243 |
tggtttgtcaacggtgtctttgatacctaatcgtgattgtccatcaaatgccgagttcattgatacatacactcactcagcagagggtgcaccaatcccc |
342 |
Q |
| |
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|||| | || || |||||||||||||| || |||||||||||| || ||||| | |||||||||||||||| |||||| | || ||| | |||| | | |
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|
| T |
48790234 |
tggtctatcgactgtgtctttgatacccaaccgtgattgtccaccacatgcccaattcattgatacatacattcactctgatgatggtaccccaagcatc |
48790135 |
T |
|
| Q |
343 |
ttgaagaatgcagtttgtg |
361 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
48790134 |
ttgaagaatgcaatttgtg |
48790116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 43 - 361
Target Start/End: Complemental strand, 15825965 - 15825647
Alignment:
| Q |
43 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
142 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| | || || | ||||| || || || |||||||||||||||| |
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|
| T |
15825965 |
tgggccaactggaagtttcatataggatttgatgtacgagctggtattataatatcacttgcatctatttacgaccttgaaaaacacaaatctcgtagag |
15825866 |
T |
|
| Q |
143 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
242 |
Q |
| |
|
||||||||||||| || |||||||| | ||||||||||||||||||||| | || || |||||||||||||| || || ||||||||||||| |||||| |
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|
| T |
15825865 |
tattatacaaagggtatatttctgagttgtttgtgccataccaagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatt |
15825766 |
T |
|
| Q |
243 |
tggtttgtcaacggtgtctttgatacctaatcgtgattgtccatcaaatgccgagttcattgatacatacactcactcagcagagggtgcaccaatcccc |
342 |
Q |
| |
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|||| || || || |||||||||||||||||||| |||||| || | | | |||||||||||||||| |||||| | ||| ||| |||||| || | |
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| T |
15825765 |
tggtcgatctactgtttctttgatacctaatcgtgactgtccaccacactctcatttcattgatacatacattcactctgtagatggtacaccaagcctc |
15825666 |
T |
|
| Q |
343 |
ttgaagaatgcagtttgtg |
361 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
15825665 |
ttgaagaatgcaatttgtg |
15825647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 112 - 313
Target Start/End: Complemental strand, 48808106 - 48807906
Alignment:
| Q |
112 |
tacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttacttta |
211 |
Q |
| |
|
|||||| ||||||| ||||| | |||| | ||| | ||||||| |||||||| || || |||||||| || ||||| ||| | || ||||||||||||| |
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|
| T |
48808106 |
tacgatatagagaaacacaagtttcgtcgtgtactctacaaagc-tacatttccgagctatttgtgccttatcaagacccaaccgaagaattttacttta |
48808008 |
T |
|
| Q |
212 |
agactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttgatacctaatcgtgattgtccatcaaatgccgagttcattgatacata |
311 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||| |
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|
| T |
48808007 |
agactttctttgattctggagagtttggatttgccctgtcaacggtgtctttgatacctaatcgtgattgtccaccacatgctcagttcattcatacata |
48807908 |
T |
|
| Q |
312 |
ca |
313 |
Q |
| |
|
|| |
|
|
| T |
48807907 |
ca |
48807906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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