View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6425_high_8 (Length: 247)
Name: NF6425_high_8
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6425_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 9839157 - 9839370
Alignment:
| Q |
25 |
tgtttcttaaacttggtcaacaaaactcaactatttt-ttattagtcttggtcaataccaacatgtataataatggatccacaattccaaatccactaac |
123 |
Q |
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| T |
9839157 |
tgtttattaaacttggtcaacaaaactcaactatttttttattagtcttggtcaataccaacatgtataataatggatccacaattccaaatccactaac |
9839256 |
T |
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| Q |
124 |
tcaatttccatgaactttacatgtatatcgttcaagggaatgataagtattctatctacatatggaccttgtttccaccaagtaccaactcaattttcaa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9839257 |
tcaatttccatgaactttacatgtatatcgttcaagggaatgataagtattgtatctacatatggaccttgtttccaccaagtaccaactcaattttcaa |
9839356 |
T |
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| Q |
224 |
catgtatgatgatg |
237 |
Q |
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|||||||||||||| |
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| T |
9839357 |
catgtatgatgatg |
9839370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 9839110 - 9839156
Alignment:
| Q |
105 |
caattccaaatccactaactcaatttccatgaactttacatgtatat |
151 |
Q |
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| T |
9839110 |
caattccaaatccactaactcaatttccatggactttatatatatat |
9839156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 9839380 - 9839414
Alignment:
| Q |
106 |
aattccaaatccactaactcaatttccatgaactt |
140 |
Q |
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| T |
9839380 |
aattgcaaatccactaactcaatttccatgaactt |
9839414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 6852458 - 6852629
Alignment:
| Q |
47 |
aaactcaactattttttattagtcttggtcaataccaacatgtataataatggatccacaattccaaatccactaactcaatttccatgaactttacatg |
146 |
Q |
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|||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
6852458 |
aaactcaactattttt-attagtcttggtcaatttcaacat-tataataatggatccacaattccaaatccactaactcaatttccatggacttcacata |
6852555 |
T |
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| Q |
147 |
tatatcgttcaagggaatgataagtattctatctacatatggaccttgtttccaccaagtaccaactcaatttt |
220 |
Q |
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|| || |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6852556 |
tacattgttcaagggaatgatatgtatgctatctatatatggaccttgtttccaccaagtaccaactcaatttt |
6852629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 24352163 - 24352106
Alignment:
| Q |
180 |
tacatatggaccttgtttccaccaagtaccaactcaattttcaacatgtatgatgatg |
237 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24352163 |
tacatatggacctggtttccaccaagtactaactcaattttcaacatgtatgatgatg |
24352106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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