View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6425_low_10 (Length: 293)

Name: NF6425_low_10
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6425_low_10
NF6425_low_10
[»] chr5 (14 HSPs)
chr5 (9-285)||(28080547-28080823)
chr5 (5-91)||(28080804-28080890)
chr5 (5-87)||(28080871-28080953)
chr5 (5-87)||(28080934-28081016)
chr5 (4-54)||(27930008-27930058)
chr5 (4-54)||(27930416-27930466)
chr5 (4-54)||(27930620-27930670)
chr5 (5-59)||(27931029-27931083)
chr5 (4-54)||(28081171-28081221)
chr5 (4-54)||(28081375-28081425)
chr5 (4-54)||(28081579-28081629)
chr5 (4-54)||(28081783-28081833)
chr5 (4-54)||(27930824-27930874)
chr5 (5-54)||(27930213-27930262)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 28080823 - 28080547
Alignment:
Q  9 cttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaatcttttgaccagcgatcgttacttcatatgaatgattc 108  Q
    ||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28080823 cttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccgatcttttgaccagcgatcgttacttcatatgaatgattc 28080724  T
Q  109 tacaggtactatcaattttccggttgatcctctcattgatatttctcaacactcgaataggatgagtattggcaacaagaatttgtatccacacttatcc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28080723 tacaggtactatcaattttccggttgatcctctcattgatatttctcaacactcgaatatgatgagtattggcaacaagaatttgtatccacacttatcc 28080624  T
Q  209 tatcaagggacaccaactctacaattgcatcatgtttctgattatgcagtagataacaatgtcatcaatgatgatgt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080623 tatcaagggacaccaactctacaattgcatcatgtttctgattatgcagtagataacaatgtcatcaatgatgatgt 28080547  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 28080890 - 28080804
Alignment:
Q  5 caatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaatcttttgaccagcgatcgtta 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  28080890 caatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaaccttttgaacagcaatcgtta 28080804  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 28080953 - 28080871
Alignment:
Q  5 caatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaatcttttgaccagcgatc 87  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  28080953 caatcttttgaccagcgatcattatcatcatctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatc 28080871  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 28081016 - 28080934
Alignment:
Q  5 caatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaatcttttgaccagcgatc 87  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  28081016 caatcttttgaactgcgatcattatcatcatctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatc 28080934  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 27930008 - 27930058
Alignment:
Q  4 tcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 54  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27930008 tcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930058  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 27930416 - 27930466
Alignment:
Q  4 tcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 54  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27930416 tcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930466  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 27930620 - 27930670
Alignment:
Q  4 tcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 54  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27930620 tcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930670  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 27931029 - 27931083
Alignment:
Q  5 caatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaa 59  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  27931029 caatcttttgaccaacgatcattatcatcatctaatcatttgttcaacagttcaa 27931083  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 28081221 - 28081171
Alignment:
Q  4 tcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 54  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081221 tcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 28081425 - 28081375
Alignment:
Q  4 tcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 54  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081425 tcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081375  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 28081629 - 28081579
Alignment:
Q  4 tcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 54  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081629 tcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081579  T

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Target: chr5; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 28081833 - 28081783
Alignment:
Q  4 tcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 54  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081833 tcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081783  T

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Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 27930824 - 27930874
Alignment:
Q  4 tcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 54  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  27930824 tcaatcttttgaccaacgatcattatcatcatctaatcatttgttcaacag 27930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 27930213 - 27930262
Alignment:
Q  5 caatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 54  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||| ||||    
T  27930213 caatcttttgaccagcaatcattatcatcatctaattatttgttcgacag 27930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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