View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6425_low_11 (Length: 271)
Name: NF6425_low_11
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6425_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 805642 - 805403
Alignment:
| Q |
19 |
aaaatagctgcgaagagccaatttataacacacactactataggcaggtaggctgcactctgagcattaaatcacatatactttaccaaactacattaat |
118 |
Q |
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| T |
805642 |
aaaatagctgcgaagagccaatttataacacacactactataggcaggtaggctgcactctgagcattaaatcacatatactttaccaaactacattaat |
805543 |
T |
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| Q |
119 |
tatctcatttggatctaaaatcttttgatatctcacacctacaactaaattaattatgtcatggtttcaactttcaaggttgtatttgtgtcagtgtgtc |
218 |
Q |
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| T |
805542 |
tatctcatttggatctaaaatcttttgatatctcacacctacaactaaattaattatgtcatggtttcaactttcaaggttgtatttgtgtcagtgtatc |
805443 |
T |
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| Q |
219 |
actgtcagtgatcgtgtaatgttcagtatcgatgtctgtg |
258 |
Q |
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| T |
805442 |
actgtcagtgatcgtgtaatgttcagtatcgatgtctgtg |
805403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 1266242 - 1266294
Alignment:
| Q |
119 |
tatctcatttggatctaaaatcttttgatatctcacacctacaactaaattaa |
171 |
Q |
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| T |
1266242 |
tatctcatttagatctaaaatcttttgatatctcacacctacaactaaattaa |
1266294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 36053861 - 36053791
Alignment:
| Q |
19 |
aaaatagctgcgaagagccaatttataacacacactactataggcaggtaggctgcactctgagcattaaatca |
92 |
Q |
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| T |
36053861 |
aaaatagctgcaaagagccaatttataacacacacta---taggcaggtaggctgcaatctgagcattaaatca |
36053791 |
T |
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