View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6425_low_13 (Length: 240)
Name: NF6425_low_13
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6425_low_13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9895163 - 9894922
Alignment:
| Q |
1 |
tccaaacagtgctctcaaaa-ttcagagcaatgtctgagtgggagaagagtcagaaaatgatgaaccaagcgacttatatgatacaaagggttctgaagg |
99 |
Q |
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| T |
9895163 |
tccaaacagtgctctcaaaaattcagaacaatgtctgagtgggagaagagccagaaaatgatgaaccaagagacttatatgatacaaagggttctgaagg |
9895064 |
T |
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| Q |
100 |
ccaaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctaatgtttcaatgtctttgtgaaggcaaattagtgcagaataa |
199 |
Q |
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| T |
9895063 |
ccaaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctcatgtttcaatgtctttgtgaaggcaaattaatgcagaataa |
9894964 |
T |
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| Q |
200 |
tatctccttggttgatt-aaaacatctttgttggttgattga |
240 |
Q |
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| T |
9894963 |
tatctccttggttgattcaaaacatctttgttggttgattga |
9894922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 11248222 - 11247984
Alignment:
| Q |
3 |
caaacagtgctctcaaaattcagagcaatgtctgagtgggagaagagtcagaaaatgatgaaccaagcgacttatatgatacaaagggttctgaaggcca |
102 |
Q |
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| T |
11248222 |
caaacagtgctctcaaaattcagaacaatgactgaaagggataagagcaagaaaatggtgaatcaagaaacatatatgaaagaaagggttctaaaggcca |
11248123 |
T |
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| Q |
103 |
aagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctaatgtttcaatgtctttgtgaaggcaaattagtgcagaataatat |
202 |
Q |
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| T |
11248122 |
aagagaaactgaagatgcaaaggcatgacaacaaagagaaagagatggcaatgctgatgtttcaatatctttatgaaggtaactttatgcagagtaatat |
11248023 |
T |
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| Q |
203 |
ctccttggttgatt-aaaacatctttgttggttgattga |
240 |
Q |
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| T |
11248022 |
gtcattggttgattcaaaacatctttgttggttgattga |
11247984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 11108580 - 11108653
Alignment:
| Q |
164 |
tcaatgtctttgtgaaggcaaattagtgcagaataatatctccttggttgatt-aaaacatctttgttggttga |
236 |
Q |
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| T |
11108580 |
tcaatgtctttttgaaagcaaatttatgcagaataatatgtcattggttgattcaaaacatcttttttggttga |
11108653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 11106708 - 11106780
Alignment:
| Q |
52 |
agaaaatgatgaaccaagcgacttatatgatacaaagggttctgaaggccaaagagaaactgaagacacaaag |
124 |
Q |
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| T |
11106708 |
agaaaatgatgaaccaagagactttcttggcacaaagggttctgaaggctgaagagaaattgatgaaacaaag |
11106780 |
T |
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