View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6425_low_14 (Length: 228)
Name: NF6425_low_14
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6425_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 10899301 - 10899476
Alignment:
| Q |
1 |
cgtccgattaaattaattgaatgatgattcaaatgtcttgttgattgagttttgtcatattttagacttgagatattaatctttacaattgtatgcaaaa |
100 |
Q |
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| T |
10899301 |
cgtccgattaaatgaattgaatgatgattcaaatgtcttgttgattgagttttgtcata--ttagatttgagagattaatctttacaattgtatacaaaa |
10899398 |
T |
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| Q |
101 |
gataaatcattcaattctcattnnnnnnnntggtatgcgtaggaaaacctcaaaaagtaattgtgtgtgtgactaagt |
178 |
Q |
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| T |
10899399 |
gataaatcattcaattcttattaaaaaaaatggtatgcgtaggaaaacctcaaaaagtaattgtgtgtgtgactaagt |
10899476 |
T |
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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 10899622 - 10899675
Alignment:
| Q |
174 |
taagttgaaagtgtcccttggttaagtagttagattaagttgttttgagtgatg |
227 |
Q |
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| T |
10899622 |
taagttgaaagtgtcccttggttaagtagttagattaagttgttttgagtgatg |
10899675 |
T |
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