View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6425_low_2 (Length: 422)
Name: NF6425_low_2
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6425_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 203 - 410
Target Start/End: Original strand, 17543911 - 17544119
Alignment:
| Q |
203 |
ttatatgtgtttaattatttcatttagagttgaaaacattatttacttttcaaaaatataatagaatacgccaacgaaaattgatgtagttaataagaac |
302 |
Q |
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| T |
17543911 |
ttatatgtgtttaattatttcatttagagttgaaaacattatttatttttcaaaaatataataaaatacgccaacgaaaattgatgtagttaataagaac |
17544010 |
T |
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| Q |
303 |
tcaacctatatcttacaagcatgcgagtttcaacctttatatcaatatgaattattcaatgataggtaaaatgtaacatcctcta-ttttttaatataat |
401 |
Q |
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| T |
17544011 |
tcaacctatatcttacaagcatgcgagtttcaacctttatatcaatatgaattatccaatgataggtaaaatgtaacatcctctatttttttaatataat |
17544110 |
T |
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| Q |
402 |
aaagcccta |
410 |
Q |
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| T |
17544111 |
aaagcccta |
17544119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 17543783 - 17543903
Alignment:
| Q |
49 |
tataaacaacattgagaaaagttgacttgtcatgtctacaaataaaatgaattagagtagtac-nnnnnnnaaccaaaaggtgattagtattttttgtat |
147 |
Q |
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| T |
17543783 |
tataaacaacattgaaaaa--ttgacttgtcatgtctacaaataaaatgaattagagtagtacttttttttaaccaaaaggtgattagtattttttgtat |
17543880 |
T |
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| Q |
148 |
tacttcatctcaagaatataaat |
170 |
Q |
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| T |
17543881 |
tacttcatctcaataatataaat |
17543903 |
T |
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