View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6425_low_5 (Length: 380)

Name: NF6425_low_5
Description: NF6425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6425_low_5
NF6425_low_5
[»] chr3 (8 HSPs)
chr3 (4-362)||(29821876-29822219)
chr3 (277-328)||(49333873-49333923)
chr3 (279-353)||(54653010-54653085)
chr3 (279-332)||(43102304-43102357)
chr3 (277-372)||(33149973-33150069)
chr3 (277-332)||(47807849-47807904)
chr3 (277-322)||(12992033-12992077)
chr3 (277-322)||(50259425-50259469)
[»] chr5 (3 HSPs)
chr5 (134-276)||(40880222-40880364)
chr5 (277-332)||(1663507-1663562)
chr5 (277-326)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (279-358)||(118777-118856)
chr8 (277-332)||(5777111-5777166)
chr8 (277-322)||(45436181-45436225)
chr8 (288-332)||(7487145-7487188)
[»] chr6 (2 HSPs)
chr6 (325-369)||(24546535-24546579)
chr6 (3-36)||(4030718-4030751)
[»] chr1 (2 HSPs)
chr1 (279-353)||(3978364-3978439)
chr1 (277-322)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (277-353)||(38407199-38407275)
chr7 (279-332)||(19279339-19279392)
chr7 (277-326)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (277-353)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (279-353)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 362
Target Start/End: Original strand, 29821876 - 29822219
Alignment:
Q  4 acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtttagaattatgtagtttag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  29821876 acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtt---------------tag 29821960  T
Q  104 taactgctattttctaggaagttagttatcatgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggcc 203  Q
    ||||| | |||||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||    
T  29821961 taactaccattttctaggaagttagtttccatgtaatatgtatttgaatgattgtacttttatggaatcatgaagaaaatattcagaaaaacttccagcc 29822060  T
Q  204 ttcctttcttctttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatttatcatgttgttgttgaaattgagattggggt 303  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  29822061 ttcctttcttttttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatctatcatattgttgttgaaattgagattggggt 29822160  T
Q  304 gtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29822161 gtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 29822219  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 49333873 - 49333923
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgat 328  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  49333873 tgttgttgttgaaattgagatt-gggtgtttgtggttgttgaaaaggttgat 49333923  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 54653085 - 54653010
Alignment:
Q  279 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 353  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  54653085 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 54653010  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 43102357 - 43102304
Alignment:
Q  279 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 332  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||||| |||||    
T  43102357 ttgttgttgaaattgggattggaatgtttgtggttgttgaaaaggttgttgttg 43102304  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 33150069 - 33149973
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaa-tgttcttgttgttgatgatg 372  Q
    |||||||||||||||||  |||||||||||| ||||| ||| |||||||| || || || |||||| || || ||| |||| ||||||||| |||||    
T  33150069 tgttgttgttgaaattgccattggggtgtttatggttcttgcaaaggttgctgctgttgttattgtgattaaaaaattgttgttgttgttgttgatg 33149973  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 47807849 - 47807904
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 332  Q
    ||||||||||||||||||||||  | ||||||||||| | |||||||||| |||||    
T  47807849 tgttgttgttgaaattgagattaagatgtttgtggttgtcgaaaaggttgttgttg 47807904  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 12992033 - 12992077
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 322  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  12992033 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 12992077  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 50259469 - 50259425
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 322  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  50259469 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 50259425  T

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Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 134 - 276
Target Start/End: Complemental strand, 40880364 - 40880222
Alignment:
Q  134 atgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggccttcctttcttctttaggagacccatccctt 233  Q
    ||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||    
T  40880364 atgtaatgtgtatttgaatgattgtacgtttgttgaatcattaagaaaatattcataaaaacttacagccttcctttcttctttaggagactcatccctt 40880265  T
Q  234 ctcgaattggaataatcactacttctctaacaatcatttatca 276  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  40880264 ctcgaattgggataatcactacttctttaacaatcatctatca 40880222  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 1663562 - 1663507
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 332  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||| |||| |||||    
T  1663562 tgttgttgttgaaattgagattgagatgtttgtggttgttgaaaaagttgttgttg 1663507  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 10085037 - 10084988
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 326  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||    
T  10085037 tgttgttgttgaaattgagattggaatgttcgtggttgttgaaaaggttg 10084988  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 118777 - 118856
Alignment:
Q  279 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaatgttct 358  Q
    ||||| ||||||||||||||||||||||| ||| || ||||||||||||||||| || | ||||| |||||||||| ||||    
T  118777 ttgttattgaaattgagattggggtgtttatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaattttct 118856  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 5777111 - 5777166
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 332  Q
    ||||||||||| ||||||||||||| |||||| | || |||||||||||| |||||    
T  5777111 tgttgttgttggaattgagattgggttgtttgagattgttgaaaaggttgttgttg 5777166  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 45436181 - 45436225
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 322  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  45436181 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 45436225  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 7487145 - 7487188
Alignment:
Q  288 aaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 332  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  7487145 aaattgagattggggtgtttatgg-ttatgaaaaggttgatgttg 7487188  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 24546535 - 24546579
Alignment:
Q  325 tgatgttgctgatattgtaatgaagaaatgttcttgttgttgatg 369  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  24546535 tgatgttgctggtattgtgatgaagaaatgttcttgttgttgatg 24546579  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 4030718 - 4030751
Alignment:
Q  3 gacatcatcaaaattatatatgttaaatagttta 36  Q
    |||||||||||||||||| |||||||||||||||    
T  4030718 gacatcatcaaaattatacatgttaaatagttta 4030751  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 3978439 - 3978364
Alignment:
Q  279 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 353  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  3978439 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 3978364  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 38961773 - 38961817
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 322  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  38961773 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 38961817  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 38407199 - 38407275
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 353  Q
    |||||||||||||||||||||| ||||| || ||| || ||||||||||||||||| || | ||||| ||||||||||    
T  38407199 tgttgttgttgaaattgagattagggtgattatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaat 38407275  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 19279339 - 19279392
Alignment:
Q  279 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 332  Q
    |||||||| |||||||| ||| | ||||||||||| |||||||||||| |||||    
T  19279339 ttgttgttaaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttg 19279392  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 25154619 - 25154668
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 326  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||| ||||    
T  25154619 tgttgttgttggatttgagattggagtgtttgtggttgttgaaaaagttg 25154668  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 26791090 - 26791166
Alignment:
Q  277 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 353  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  26791090 tgttgctgttgaaattgagat-gggatgtttgtggttgttgaaaaggttgttgttgttgttcatggtaatgaagaaat 26791166  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 34039702 - 34039627
Alignment:
Q  279 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 353  Q
    ||||||||||||||| ||||||  | ||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  34039702 ttgttgttgaaattgggattggaatatttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 34039627  T

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