View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6426_low_1 (Length: 727)
Name: NF6426_low_1
Description: NF6426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6426_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 211 - 712
Target Start/End: Complemental strand, 32790516 - 32790015
Alignment:
| Q |
211 |
atacaatcctagatgcgtcaaattcgagctgaaattgatgctgtatccaaagctaatggcgatcgcatgaggaaaccgaagggcgacaggttatttctta |
310 |
Q |
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| T |
32790516 |
atacaatcctagatgcgtcaaattcgagctgaaattggtgctgtatccaaagctaatggcgatcgcatgaggaaaccgaagggcgacaggttatttctta |
32790417 |
T |
|
| Q |
311 |
tttacctgtttaattttccagtctttttgcacgatgttgatatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgta |
410 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32790416 |
tttgcctgtttaattttccagtctttttgcacgatgttgatatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgta |
32790317 |
T |
|
| Q |
411 |
actctgttgattgttaaggtaaatcctgattttgttcacggataaagtcgacaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggtt |
510 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32790316 |
actctgttgactgttaaggtaaatcctgattttgttcacggataaagtggacaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggtt |
32790217 |
T |
|
| Q |
511 |
atggtggtttagctgcttatctttcagaaaagtctctagttgagcagcttggctggaaatatcaacttattggaaacaggcacgactgatcattgaatta |
610 |
Q |
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| T |
32790216 |
atggtggtttagcagcttatctttcagaaaagtctctagttgagcagcttggctggaaatatcaacttattggaaacaggcacgactgatcattgaatta |
32790117 |
T |
|
| Q |
611 |
tgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagattatgcgtgggaattgttaagatctaccattatagtt |
710 |
Q |
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| T |
32790116 |
tgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagattatgcgtgggaattgttaagatctaccattatagtt |
32790017 |
T |
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| Q |
711 |
at |
712 |
Q |
| |
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|| |
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| T |
32790016 |
at |
32790015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 32790715 - 32790584
Alignment:
| Q |
9 |
agcaaaggacaaagtatcgcaaaacaacaatgccttcacaaatttatttgaatttgaaaaccaaaaaatggaatacgtgagcccagaaggacttcgcttg |
108 |
Q |
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| T |
32790715 |
agcaaaggacaaagtatcgcaaaacaacattgccttcacaattttttttgaatttgaacaccaaaaaatggaatacgtgagcccagaaggacttcgcttg |
32790616 |
T |
|
| Q |
109 |
gatggtcgcagtcgcagacccatggaagtaggtactac |
146 |
Q |
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| T |
32790615 |
gatggtc------gcagacccatggaagtaggtactac |
32790584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 461 - 677
Target Start/End: Complemental strand, 48283315 - 48283083
Alignment:
| Q |
461 |
acaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcagct- |
559 |
Q |
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||||||| |||||| ||||||||||| || || |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48283315 |
acaaaaccctggtaaacaaagtgctgccaaccttgcttgtatgacgggttattatggtttagcagcttatctttcagaaaagtctctagttgagcagctc |
48283216 |
T |
|
| Q |
560 |
------------tggctggaaatatcaac---ttattggaaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaag |
644 |
Q |
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| ||||||||||| ||| |||||||||||||||||| |||||||||||| | ||| || ||||||||||||||||||||| ||||| |
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| T |
48283215 |
aatacatgagcttagctggaaatattaacggtttattggaaacaggcacggctgatcattgaactctgagaaccttaccagggaccagctgattttgaag |
48283116 |
T |
|
| Q |
645 |
gaaactttagcagaaacatggcgtggagattat |
677 |
Q |
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||| ||||||||||||||||| | ||||||||| |
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| T |
48283115 |
gaacctttagcagaaacatggtgaggagattat |
48283083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 48283734 - 48283665
Alignment:
| Q |
271 |
gatcgcatgaggaaaccgaagggcgacaggttatttcttatttacctgtttaattttccagtctttttgc |
340 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
48283734 |
gatcgcatgaggaaaccaaagggcgacaggttatttcttatttacttgtttaatttcccagtctttttgc |
48283665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 48284308 - 48284253
Alignment:
| Q |
214 |
caatcctagatgcgtcaaattcgagctgaaattgatgctgtatccaaagctaatgg |
269 |
Q |
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|||||||||||||| ||||||||||| || |||| |||||||||||||||| |||| |
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| T |
48284308 |
caatcctagatgcgacaaattcgagcagagattggtgctgtatccaaagctgatgg |
48284253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 557
Target Start/End: Original strand, 50271416 - 50271467
Alignment:
| Q |
506 |
gggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcag |
557 |
Q |
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||||||| ||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
50271416 |
gggttatcatggcttagcagcttatctttcggaaaagtctctagttgagcag |
50271467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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