View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6426_low_2 (Length: 447)

Name: NF6426_low_2
Description: NF6426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6426_low_2
NF6426_low_2
[»] chr3 (10 HSPs)
chr3 (1-447)||(36313109-36313555)
chr3 (153-447)||(36325639-36325933)
chr3 (68-447)||(36327418-36327797)
chr3 (92-307)||(36333266-36333482)
chr3 (99-374)||(36335978-36336253)
chr3 (99-291)||(36320605-36320797)
chr3 (327-383)||(36320836-36320892)
chr3 (99-204)||(36309083-36309194)
chr3 (315-378)||(36309326-36309389)
chr3 (327-375)||(36333508-36333556)
[»] chr5 (3 HSPs)
chr5 (328-447)||(16053144-16053263)
chr5 (166-279)||(16052979-16053092)
chr5 (166-214)||(15936214-15936262)


Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 36313109 - 36313555
Alignment:
Q  1 catcatcattatcatcatcagaacagatatcatattgccccaaaaagaagcacgatcattataataattgtcttcatggttataacgaactggcatgcgc 100  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||    
T  36313109 catcatcatcatcatcatcagaacagatataatattgccccaaaaagaagcacgatcattataatagttgttttcatggttataacgaactggcatgtgc 36313208  T
Q  101 aaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaataa 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36313209 aaatcattaatctgatcaatgcagcttttctccaaaccttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcatttatcaataa 36313308  T
Q  201 tggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagagtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36313309 tggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagagtc 36313408  T
Q  301 acaagatgtaaaccttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36313409 acaagatgtaaaccttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaa 36313508  T
Q  401 attacaaccttctccaaccgcggaagctttctcacagcttcactaaa 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36313509 attacaaccttctccaaccgcggaagctttctcacagcttcactaaa 36313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 153 - 447
Target Start/End: Original strand, 36325639 - 36325933
Alignment:
Q  153 gacaatcacgaatgtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcg 252  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||     
T  36325639 gacaaacactaatgtcaagagattcaagaagagggcatttatcaattatggcgagcacacgaagttcactgagcttgtgtcctttcatatcaagatggca 36325738  T
Q  253 tagaccaggcattgtttcagcaataacaagtgccgttttatcagagtcacaagatgtaaaccttgaatttacaaatttaagcgatttcaaaagagggcat 352  Q
    |||||||||||| ||||||||||||||||  ||| |||||||||| |||| ||| | ||||| |     |  |||||||||||||||||||||||||||     
T  36325739 tagaccaggcatcgtttcagcaataacaaaagccattttatcagattcacgagaagcaaaccatcctactgaaaatttaagcgatttcaaaagagggcaa 36325838  T
Q  353 gatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaagctttctcacagcttcactaaa 447  Q
    |||||||||||||||||||||||||| |||||||| ||   |||||||||  |||||||||| ||| |||||||||||||||  |||||||||||    
T  36325839 gatcgaccaagggcttcaagagagacctcagttagataagaatgtgaaatgtcaaccttctctaacagcggaagctttctcaaggcttcactaaa 36325933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 68 - 447
Target Start/End: Original strand, 36327418 - 36327797
Alignment:
Q  68 ttgtcttcatggttataacgaactggcatgcgcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgt 167  Q
    |||||||||||| ||||||||  |||||   ||||||| || ||||| |||||||| ||||||| ||||  |||| |||||||||||||||||| |||||    
T  36327418 ttgtcttcatggatataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatgt 36327517  T
Q  168 caagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgt 267  Q
    ||||||| ||||||||||||||  ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||    
T  36327518 caagagactcaagaagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgt 36327617  T
Q  268 ttcagcaataacaagtgccgttttatcagagtcacaagatgtaaaccttgaatttacaa-atttaagcgatttcaaaagagggcatgatcgaccaagggc 366  Q
    ||||||||||||||  ||| |||||||||||||||||||| | |  |    ||  |||| ||||||| |||||||||||||||||  | ||||| |||||    
T  36327618 ttcagcaataacaaacgccattttatcagagtcacaagat-tcatgcgaccatgaacaatatttaagggatttcaaaagagggcaataacgacctagggc 36327716  T
Q  367 ttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaagctttctcacagcttcactaaa 447  Q
    || |||||| ||||| ||||||| |  |||||||||  ||| |||||||||  | |||||||||||||  |||||| ||||    
T  36327717 tttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaa 36327797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 92 - 307
Target Start/End: Original strand, 36333266 - 36333482
Alignment:
Q  92 ggcatgcgcaaatcattaatctgatcaatgcagctttt-ctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcat 190  Q
    ||||| |||| |||||| || ||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  36333266 ggcattcgcatatcattgatttgatcaatgcacctttttctccaaatcttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcct 36333365  T
Q  191 ttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttt 290  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| |||    
T  36333366 ttatcaataatggcgagcacaccaagttgagtgagcttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattt 36333465  T
Q  291 tatcagagtcacaagat 307  Q
    |||||||||| ||||||    
T  36333466 tatcagagtcgcaagat 36333482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 99 - 374
Target Start/End: Original strand, 36335978 - 36336253
Alignment:
Q  99 gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat 198  Q
    ||||||| || ||||| |||||||| ||||||| ||||  ||||||||||| | |||||  || |||||||||| |||||||||||||||||||||||||    
T  36335978 gcaaatccttgatctggtcaatgcaccttttcttcaaatcttcattcaaattaagacaaaaactaatgtcaagatattcaagaagagggcatttatcaat 36336077  T
Q  199 aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagag 298  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||  ||| |||||||||||    
T  36336078 aatggcgagcacgccaagttcagtgagcttgtgtcctctcatatcaagatggcatagaccaggcattgtttcagcaataagaaacgccattttatcagag 36336177  T
Q  299 tcacaagatgtaa---accttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagag 374  Q
    ||||||||   ||   | | ||||||   | | | |||| |||||||||||||||| ||||||||||||||||||||||    
T  36336178 tcacaagagtcaagcgagcatgaatt---atactgaagccatttcaaaagagggcaagatcgaccaagggcttcaagag 36336253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 99 - 291
Target Start/End: Original strand, 36320605 - 36320797
Alignment:
Q  99 gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat 198  Q
    ||||||| || ||||| |||||||| ||||||  ||||  |||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  36320605 gcaaatccttgatctggtcaatgcaccttttcgtcaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacaggacatttatcaat 36320704  T
Q  199 aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgtttt 291  Q
    ||||||  |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| ||||    
T  36320705 aatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccatttt 36320797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 36320836 - 36320892
Alignment:
Q  327 atttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcag 383  Q
    |||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  36320836 atttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagagacctcag 36320892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 36309083 - 36309194
Alignment:
Q  99 gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaa------ataatgacaatcacgaatgtcaagagattcaagaagagggcattt 192  Q
    |||||||||| |||||||||||||| ||||||| |||||||||| ||||      |||||| ||   ||||||||||||||||| ||| |||||||| ||    
T  36309083 gcaaatcattgatctgatcaatgcaccttttcttcaaactttcactcaattcaagataatgtcatcgacgaatgtcaagagatttaagcagagggcactt 36309182  T
Q  193 atcaataatggc 204  Q
    | ||| ||||||    
T  36309183 aacaagaatggc 36309194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 36309326 - 36309389
Alignment:
Q  315 ttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagac 378  Q
    |||| ||| |||||| |||||| |||||||||||||| |||||||||||  ||||||| |||||    
T  36309326 ttgattttccaaattcaagcgacttcaaaagagggcaagatcgaccaagcacttcaagggagac 36309389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 36333508 - 36333556
Alignment:
Q  327 atttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagaga 375  Q
    |||||||| ||||||||||| |||| |||||||||||  ||||||||||    
T  36333508 atttaagcaatttcaaaagatggcaagatcgaccaagaacttcaagaga 36333556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 447
Target Start/End: Original strand, 16053144 - 16053263
Alignment:
Q  328 tttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaagc 427  Q
    |||||| ||||||||||||||||| ||||| |||||| || ||| ||| || ||||||||   || || |||||| |||| |||||| ||| ||||||||    
T  16053144 tttaagtgatttcaaaagagggcaagatcggccaaggactgcaatagatacctcagttagcctgttatctgaaatgacaagcttctctaacagcggaagc 16053243  T
Q  428 tttctcacagcttcactaaa 447  Q
    || |||||||||||||||||    
T  16053244 ttcctcacagcttcactaaa 16053263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 279
Target Start/End: Original strand, 16052979 - 16053092
Alignment:
Q  166 gtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcatt 265  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| ||||   | |||||| |||| ||| || |||||||||| || ||||  || |||     
T  16052979 gtcaagagattcaagaaaagggcatttatcaagaatggcgagcaaaccatcattagtgaggttgtctcccttgatatcaagatagcatagattagtcatc 16053078  T
Q  266 gtttcagcaataac 279  Q
    || |||||||||||    
T  16053079 gtatcagcaataac 16053092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 15936262 - 15936214
Alignment:
Q  166 gtcaagagattcaagaagagggcatttatcaataatggcgagcacacca 214  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||| ||||    
T  15936262 gtcaagagattcaagaaaaggccatttatcaagaatggcgagcaaacca 15936214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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