View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6426_low_4 (Length: 305)
Name: NF6426_low_4
Description: NF6426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6426_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 49 - 281
Target Start/End: Complemental strand, 27664616 - 27664384
Alignment:
| Q |
49 |
aatgttctcaacaaaaacaattgagcatgcaatttaagaactcactgaatattcaatcacggagtgaatcaaaatattgcatcgttcccaagctttgcga |
148 |
Q |
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| T |
27664616 |
aatgttctaaacaaaaacaattgagcgtgcaatttaagaactcactgaatattcaatcacggagtgaatcaaaatattgcatcgttcccaagctttgcga |
27664517 |
T |
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| Q |
149 |
cttggatcatgaagtacatgagctggaatacttcgatcaacgaactgaaacatgttctcagcacttaaagcacgacacatcgtttgatcccaagcaagat |
248 |
Q |
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| T |
27664516 |
cttggatcatgaagtacatgaactggaatacttcgatcaacgaactgaaacatgttcttagcacttaatgcacgacacatcgtttgatcccaagcaagat |
27664417 |
T |
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| Q |
249 |
agttgcttccatccaaaggagatgtgaccggaa |
281 |
Q |
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| T |
27664416 |
agttgcttccatccaaaggagatgtgaccggaa |
27664384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 265
Target Start/End: Complemental strand, 4261251 - 4261099
Alignment:
| Q |
113 |
tgaatcaaaatattgcatcgttcccaagctttgcgacttggatcatgaagtacatgagctggaatacttcgatcaacgaactgaaacatgttctcagcac |
212 |
Q |
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| T |
4261251 |
tgaatcaagttattacatcgttcccaagcctaacgatttggatcgagaagtgcaagaactggaatgcttccatcaacgaactgaaacttgttcttagcac |
4261152 |
T |
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| Q |
213 |
ttaaagcacgacacatcgtttgatcccaagcaagatagttgcttccatccaaa |
265 |
Q |
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| T |
4261151 |
ctaaagcatgacgaatcgctcgagcccaagcaagaaagttttttccatccaaa |
4261099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 288
Target Start/End: Complemental strand, 37245972 - 37245787
Alignment:
| Q |
110 |
gagtgaatcaaaatattgcatcgttcccaagctttgcgacttgga-------tcatgaagtacatgagctggaatacttcgatcaacgaactgaaacatg |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||| ||| || | ||| || || ||| |||| ||||||||||| |||| || |
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| T |
37245972 |
gagtgaatcaaaatattgcatcgttcccaagcttgacgatttggaatttggatcaagacgcacaagaactataatgcttccatcaacgaacttaaacttg |
37245873 |
T |
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| Q |
203 |
ttctcagcacttaaagcacgacacatcgtttgatcccaagcaagatagttgcttccatccaaaggagatgtgaccggaacagaatt |
288 |
Q |
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| T |
37245872 |
ttcttagaacctaaagcacaacgcattgcttgagcccaagcaaggttgttgcttccatccaagagaggtgtaaccgtaacagaatt |
37245787 |
T |
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