View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6426_low_7 (Length: 233)
Name: NF6426_low_7
Description: NF6426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6426_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36313044 - 36312828
Alignment:
| Q |
1 |
gtgtagatttattgtcgtgtgttagtctacgagtaaat-tacgtatttgggatccttgttgacacttagatttttgttgagtcatgtgtggttggaatgc |
99 |
Q |
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| T |
36313044 |
gtgtagatttattgtcgtgtgttagtctacgagtaaatatacgtatttgggatccttgttgacacttagatttttgttgagtcatgtgtggttggaatgc |
36312945 |
T |
|
| Q |
100 |
tttcttaatcagttgggtatatctatgtttttgttgctggatgatttcaaatgtgatttttgtttgagaagtcttattatttacaaattgcaacgatttt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36312944 |
tttcttaatcagttgggtatatctatgtttttgttgctggatgatttcaaatgtgatttttgtttgagaagtcttattatttacaaa-------gatttt |
36312852 |
T |
|
| Q |
200 |
gttttgagtgtatgtatgatatct |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
36312851 |
gttttgagtgtatgtatgatatct |
36312828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 36320391 - 36320254
Alignment:
| Q |
46 |
ttgggatccttgttgacacttagatttttgttgagtcatgtgtggttggaatgctttcttaatcagttgggtatatctatgtttttgttgctggatgatt |
145 |
Q |
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|||||||||||||||||||| ||||||| ||||| ||||| || ||||| |||||||||| |||| | | |||||||||||||||||||| || ||| |
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| T |
36320391 |
ttgggatccttgttgacactcagattttggttgattcatgggtagttggcatgctttctttatcatgttagactatctatgtttttgttgctgaataatt |
36320292 |
T |
|
| Q |
146 |
tcaaatgtgatttttgtttgagaagtcttattatttac |
183 |
Q |
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| T |
36320291 |
tccattgtgatttttgtttgagaagtcttattatttac |
36320254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 36333109 - 36332975
Alignment:
| Q |
49 |
ggatccttgttgacacttagatttttgttgagtcatgtgtggttggaatgctttcttaat-cagttgggtatatctatgtttttgttgctggatgatttc |
147 |
Q |
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| T |
36333109 |
ggatacttgtttgcactcagatttttgttgattcatgcgtgattggcatgctttgttaattcaattggat-tatctatgtttttgttgttgaatgattac |
36333011 |
T |
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| Q |
148 |
aaatgtgatttttgtttgagaagtcttattatttac |
183 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |
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| T |
36333010 |
aaatgtgatttttatttgagaagtcttattatttac |
36332975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 36325367 - 36325314
Alignment:
| Q |
130 |
ttgttgctggatgatttcaaatgtgatttttgtttgagaagtcttattatttac |
183 |
Q |
| |
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||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36325367 |
ttgttgctgaataatttcaattgtgatttttgtttgagaagtcttattatttac |
36325314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 36335785 - 36335687
Alignment:
| Q |
81 |
tcatgtgtggttggaatgctttcttaatcagttgggtatatctatgtttttgttgctggatgatttcaaatgtgatttttgtttgagaagtcttattatt |
180 |
Q |
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||||| || ||||| |||||||||| |||||||| || |||||||||||||||| ||| ||||||| | | ||||||||||| |||||||||| ||| |
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| T |
36335785 |
tcatgcgtagttggcatgctttcttgatcagttgtgt-tatctatgtttttgtttctgaatgattttgattatgatttttgtt---gaagtcttatcatt |
36335690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 17090265 - 17090375
Alignment:
| Q |
71 |
ttttgttgagtcatgtgtggttggaatgctttcttaatcagttgggtatatctatgtttttgttgctggatgatttcaaatgtgatttttgtttgagaag |
170 |
Q |
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||||||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||||||||||||||| |
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| T |
17090265 |
ttttgttgattcatgcgtggttggcatgctttcttaatcagttgggt-tatctatgtttttgtt-ttgaatgatttcaattgtgatttttgtttgagaag |
17090362 |
T |
|
| Q |
171 |
tcttattatttac |
183 |
Q |
| |
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|||| | |||||| |
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|
| T |
17090363 |
tcttttcatttac |
17090375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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