View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6426_low_9 (Length: 207)
Name: NF6426_low_9
Description: NF6426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6426_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 192
Target Start/End: Complemental strand, 33217150 - 33216983
Alignment:
| Q |
34 |
catttgtaagactgtttggaagaatttatnnnnnnnncaacttataaaagattcatatgatattttcatcttattgataaccgcctatggagcttattta |
133 |
Q |
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| T |
33217150 |
catttgtaagactgtttggaagaatttataaaaaaaacaacttataacagattcatgtgatattttcatcttattgataaccgcttatggagcttattta |
33217051 |
T |
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| Q |
134 |
catatgctttccagaatagcttgtgaaaataac---------atataaaagcatatttattttctttt |
192 |
Q |
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| T |
33217050 |
catatgctttccagaatagcttgtgaacataacgtgtaacttatataaaagcatatttattttctttt |
33216983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 32171600 - 32171560
Alignment:
| Q |
12 |
tgaacttatttacagacataagcatttgtaagactgtttgg |
52 |
Q |
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| T |
32171600 |
tgaacttatttactgacataagcatttgtgagactggttgg |
32171560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 34927092 - 34927046
Alignment:
| Q |
16 |
cttatttacagacataagcatttgtaagactgtttggaagaatttat |
62 |
Q |
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| T |
34927092 |
cttatttactgacataagcacttataagactgtttggaagaacttat |
34927046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 5924146 - 5924108
Alignment:
| Q |
12 |
tgaacttatttacagacataagcatttgtaagactgttt |
50 |
Q |
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| T |
5924146 |
tgaacttatttactgacatacgcatttgtaagactgttt |
5924108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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