View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6427_low_1 (Length: 370)
Name: NF6427_low_1
Description: NF6427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6427_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 123 - 354
Target Start/End: Original strand, 41090196 - 41090427
Alignment:
| Q |
123 |
accattacaccattcaccagtatagacatcacccccaaaaaacctataaattccaattccatgcctcaaacccttcctatactgtccacgatacctactt |
222 |
Q |
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| T |
41090196 |
accattacaccattcaccagtatagacatcaccaccaaaaaacctataaattccaattccatgcctcaaacccttcctatactgtccacgatacctactt |
41090295 |
T |
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| Q |
223 |
cctctagcccacgtttcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccactccctg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41090296 |
cctctagcccacgtttcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccactccctg |
41090395 |
T |
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| Q |
323 |
aacacttccccttatgaaactcaccttcataa |
354 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41090396 |
aacacttccccttatgaaactcaccttcataa |
41090427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 33063339 - 33063451
Alignment:
| Q |
10 |
atcatcaccttacaaactggtgttatggtgttttgttaagagaatgtgtattgtattaaattttgttaaagagtttttagggaatacttgattgatggat |
109 |
Q |
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| T |
33063339 |
atcatcaccttacaaactggtgttatggggttttgttaagagaatgtgtattgtattaaattttgttaaagagtttttagtgaatacttgattgatggat |
33063438 |
T |
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| Q |
110 |
tgttttaatctat |
122 |
Q |
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| T |
33063439 |
tgttttaatctat |
33063451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 17303718 - 17303843
Alignment:
| Q |
219 |
acttcctctagcccacgtttcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccactc |
318 |
Q |
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|||||| || ||||| || || |||||| | ||||||||| | |||||||||||||| |||||| | || ||||||||| | ||| ||||||||||||| |
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| T |
17303718 |
acttccccttgcccatgtctccacaccatacccatcatacctcccatcaatccaatccccttcatacctcccactcatactataataataaacaccactc |
17303817 |
T |
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| Q |
319 |
cctgaacacttccccttatgaaactc |
344 |
Q |
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| T |
17303818 |
cctgaacacttccccttatgaaactc |
17303843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 24238969 - 24239069
Alignment:
| Q |
217 |
ctacttcctctagcccacgtttcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccac |
316 |
Q |
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|||||||| |||||||| |||||| ||| |||||||||| |||||||||| ||||||||||||| |||||||||||| || | |||||||||| |||| |
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| T |
24238969 |
ctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccac |
24239068 |
T |
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| Q |
317 |
t |
317 |
Q |
| |
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| |
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| T |
24239069 |
t |
24239069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 1587006 - 1587088
Alignment:
| Q |
238 |
tcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccactccc |
320 |
Q |
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|||||||||||||| ||||| || || |||| ||||| |||||| ||||||||||||||| | | | |||||| |||||||| |
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| T |
1587006 |
tcaacaccaaaaccttcatatttcccgtcaacccaattcccttcatatcttccactcatattatagtaataaaccccactccc |
1587088 |
T |
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