View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_high_1 (Length: 879)
Name: NF6428_high_1
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 8932121 - 8931735
Alignment:
| Q |
18 |
cttctaataacaaacccactcactttcctcaacccgtacccgcatccatttcggatcgggttgtgcagaatgtgagggtcggtgataaacctccccggcc |
117 |
Q |
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| T |
8932121 |
cttctaataacaaacccactcactttcctcaacccgtacccgcatccatttcggatcgggttgtgcagaatgtgagggtcggtgataaacctccccggcc |
8932022 |
T |
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| Q |
118 |
gcgcttgttctcgtcgttgtttggtcgtgttactcccaatgcgaaacccggnnnnnnnnnnnnnnnnnnnnnnnncgcgtcgagatctgttccgactcca |
217 |
Q |
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| T |
8932021 |
gcgcttgttctcgtcgttgtttggtcgtgttactccgaatgcgaaacccggtgctgctcttgctgctgctgctgccgcgtcgagatctgttccgactcca |
8931922 |
T |
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| Q |
218 |
catgcggcggctattatgcaccggaggagaatttccaattcgattaaatccgattcggatatttccgatgttttgagtgaatttggtgagaaaattgaga |
317 |
Q |
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| T |
8931921 |
catgcggcggctattatgcaccggaggagaatttccaattcgattaaatccgaatcggatatttccgatgttttgagtgaatttggtgagaaaattgaga |
8931822 |
T |
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| Q |
318 |
ggagtgtgagtgttggtgatgttgatttcagaggtgctgaattgggggagagatttgggggttttgtggagagcagtgagagtgttg |
404 |
Q |
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| T |
8931821 |
ggagtgggagtgttggtgatgttgatttcagaggtgctgaattggaggagagatttgagggttttgtggagaggagtgagagtgttg |
8931735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 487 - 633
Target Start/End: Complemental strand, 8931652 - 8931506
Alignment:
| Q |
487 |
ttttgtttctaatttgttgaattctgttgaaaatagtcatgatcatgatcataagggtttggattctacaaagtctacaccttttgatgttggtggtgct |
586 |
Q |
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| T |
8931652 |
ttttgtttctaatttgttgaattctgttgaaaatagtcatgatcatgatgataacggtttggattctacaaagtctacaccttttgatgttggtggtgct |
8931553 |
T |
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| Q |
587 |
gaaaatggtcatgatcatgatagtaagggtttgaattctgcatcttt |
633 |
Q |
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| T |
8931552 |
gaaaatggtcatgatcatgatagtaagggtttgatttctgcatcttt |
8931506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 664 - 777
Target Start/End: Complemental strand, 8931475 - 8931362
Alignment:
| Q |
664 |
aaataaagataagtttggtgaaaaaagtagttttgattatgttggtgataatggtattaatgaaaaagaagaaattgtgaatggtgttggtgttgttgaa |
763 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931475 |
aaatgaagataagtttggtgaaaaaagtagttttgattatgttggtgataatggtattaatgaaaaagaagaaattgtgaatggtgttggtgttgttgaa |
8931376 |
T |
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| Q |
764 |
ggtattgggaatga |
777 |
Q |
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| T |
8931375 |
ggtattgggaatga |
8931362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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