View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_high_15 (Length: 210)
Name: NF6428_high_15
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 1674899 - 1674720
Alignment:
| Q |
14 |
cacagacaccggacacaacactacaacattcaaatttgagaaaataaaagtaatggaatgtaataaaatgtgcaggtgtcaaacatacacctaacacgtc |
113 |
Q |
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| T |
1674899 |
cacagacaccggacacgacactacaacattcaaatttgagaaaataaaagtaatggaatgtaataaaatgtgcaggtgtcaaacatacacctaacacgtc |
1674800 |
T |
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| Q |
114 |
tccaatcagaagtgtcagtgctacatatagatcttgattatcaaaacatgtcttcaatcaaaagtgtcagtgctacatat |
193 |
Q |
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| T |
1674799 |
tccaatcagaagtgtcagtgctacatatagatcttgattatcaaaacatgtcttcaatcaaaagtgtcagtgctacatat |
1674720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 1674755 - 1674705
Alignment:
| Q |
106 |
aacacgtctccaatcagaagtgtcagtgctacatatagatcttgattatca |
156 |
Q |
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| T |
1674755 |
aacatgtcttcaatcaaaagtgtcagtgctacatatagatctcgattatca |
1674705 |
T |
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