View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6428_high_4 (Length: 485)

Name: NF6428_high_4
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6428_high_4
NF6428_high_4
[»] chr1 (6 HSPs)
chr1 (1-485)||(4679120-4679604)
chr1 (1-263)||(29464967-29465229)
chr1 (55-252)||(15594207-15594404)
chr1 (16-134)||(29214509-29214627)
chr1 (303-357)||(15594455-15594509)
chr1 (296-356)||(29465262-29465322)
[»] chr7 (17 HSPs)
chr7 (1-350)||(1300573-1300925)
chr7 (1-350)||(8658478-8658830)
chr7 (3-263)||(10495162-10495422)
chr7 (3-263)||(8666536-8666796)
chr7 (6-263)||(8653567-8653824)
chr7 (3-263)||(13334156-13334416)
chr7 (3-133)||(8671990-8672120)
chr7 (4-357)||(8586400-8586756)
chr7 (7-350)||(3146388-3146731)
chr7 (269-350)||(8646263-8646344)
chr7 (3-99)||(8653306-8653402)
chr7 (62-356)||(8615891-8616188)
chr7 (369-485)||(8545122-8545238)
chr7 (403-485)||(8616201-8616283)
chr7 (296-350)||(8666829-8666883)
chr7 (302-375)||(8653863-8653936)
chr7 (396-453)||(8666932-8666989)
[»] chr2 (5 HSPs)
chr2 (16-357)||(16658214-16658558)
chr2 (396-444)||(43624928-43624976)
chr2 (290-358)||(43624819-43624887)
chr2 (302-356)||(7541645-7541699)
chr2 (301-361)||(12246096-12246156)
[»] chr4 (3 HSPs)
chr4 (3-350)||(9336595-9336942)
chr4 (301-356)||(30774670-30774725)
chr4 (396-444)||(9336498-9336546)
[»] chr8 (1 HSPs)
chr8 (290-356)||(43744223-43744289)
[»] chr3 (3 HSPs)
chr3 (112-234)||(53416876-53416997)
chr3 (110-242)||(53417432-53417564)
chr3 (301-349)||(53416761-53416809)
[»] chr5 (1 HSPs)
chr5 (291-350)||(28219326-28219385)
[»] chr6 (1 HSPs)
chr6 (9-98)||(28910500-28910589)


Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 4679604 - 4679120
Alignment:
Q  1 aaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679604 aaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcct 4679505  T
Q  101 cgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679504 cgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtaga 4679405  T
Q  201 catttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagggtgtgtcacgaggagcatctggacacaaaagatcaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4679404 catttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagggtgtgccacgaggagcatctggacacaaaagatcaaac 4679305  T
Q  301 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaattaaggtaccagaattatcttcacgggtagcatattcttctgtct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  4679304 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaataaaggtatcagaattatcttcacgggtagcatattcttctgtct 4679205  T
Q  401 tcttgataggcacagaagtatttctaggaatcaccacactcatggtatcttcatcaacaaggataccaagtgacaatggggtaac 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679204 tcttgataggcacagaagtatttctaggaatcaccacactcatggtatcttcatcaacaaggataccaagtgacaatggggtaac 4679120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 29464967 - 29465229
Alignment:
Q  1 aaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcct 100  Q
    ||||||||| ||||||||||||| | |||||| ||||||||||||||| | || |||||||||||||| || ||||||||||  |||| | ||||||||     
T  29464967 aaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattacattggccttccttacgaattgcatatcttcca 29465066  T
Q  101 cgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtaga 200  Q
    |  | |||||||||||||||| ||||| ||||| || ||  || ||||  |||||||||||  |||| || |||||||||   ||| ||||  | |||||    
T  29465067 catggtatttctcagcttctttaatcattttttcaatttctaacgttgataacctttctttgccattagtaatggtgatcacattcatattgtcagtaga 29465166  T
Q  201 catttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaaggg 263  Q
     ||||| ||||||| |||||||||| |||||||| |||| || | ||||||||||||||||||    
T  29465167 tatttccttagcagtaacagttaggatgccattttcatcaatggaaaagcatacctccaaggg 29465229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 55 - 252
Target Start/End: Original strand, 15594207 - 15594404
Alignment:
Q  55 aatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacc 154  Q
    |||||| |||||||||  ||||||||||  ||||||| ||||||  | ||||||| ||| ||||||| ||||| |||||||| || | ||| || |||||    
T  15594207 aatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacc 15594306  T
Q  155 tttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcat 252  Q
    ||||||| ||||||||||| ||||||| ||| ||||| || || ||  |||| ||  |||||||||| ||| |  ||||| |||| ||||||||||||    
T  15594307 tttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcaggatagcattttcatcgatagcaaagcat 15594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 29214627 - 29214509
Alignment:
Q  16 ttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcag 115  Q
    |||||||||| ||| || ||||||||||||||| | || ||||||||| ||||||| ||||||||||| |||| | |||||||| |  | ||||||||||    
T  29214627 ttctttaaagtatttttcatattgtaaacacaagaatctaatgcactcgttaccttggccttccttaagaattgcatatcttccacatggtatttctcag 29214528  T
Q  116 cttcttcaatcagtttttt 134  Q
    |||||| ||||| ||||||    
T  29214527 cttctttaatcaatttttt 29214509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 15594455 - 15594509
Alignment:
Q  303 accaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaatt 357  Q
    |||||||| ||| |||||  | |||||||||||||||||||||||||||| ||||    
T  15594455 accaagcaaattattgtcactagctcttgctctctcaccctcataaacctgaatt 15594509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 29465262 - 29465322
Alignment:
Q  296 caaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaat 356  Q
    |||| |||||||||||||  |||||  | ||||||||||||||||||||||| ||| ||||    
T  29465262 caaatgaaccaagcagataattgtcactagctcttgctctctcaccctcatataccctaat 29465322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 1300573 - 1300925
Alignment:
Q  1 aaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcct 100  Q
    ||||||||||||||||||||||| |||||||| |  |||||||||||| | |||||  || |||||||  | |||||| ||||||| ||||||||||||     
T  1300573 aaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaatcattcattactgtggccttctttaaaaacttcttatcttcca 1300672  T
Q  101 cgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtaga 200  Q
     | | ||||||||||| ||| |||||| ||| |||| || |||||||| ||| ||||||||||||||| | ||||||||||  |||||||||||||||||    
T  1300673 tgtggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgtaga 1300772  T
Q  201 catttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagggtgtgtcacgaggagcatctggacaca---aaagatca 297  Q
     ||||| || |||||||| ||||   |||||||| ||| ||||| ||| |||||||||||||| ||| ||||||||||| || |||  |   |||| |      
T  1300773 tatttccttggcagaaactgttaaaatgccattttcatttatagaaaaacatacctccaagggggtgccacgaggagcacctcgacggatagaaagcttg 1300872  T
Q  298 aacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 350  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  1300873 aacgaaccaagcagattgttgtcttgcgctcttgctctctcaccctcataaac 1300925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 8658478 - 8658830
Alignment:
Q  1 aaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcct 100  Q
    ||||||||||||||||| ||||| |||||||| |  |||||||||||| | |||||  || ||||||| || |||||||||||||||| ||||||||||     
T  8658478 aaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaatcattcattactttggccttccttaaaaattccttatcttcca 8658577  T
Q  101 cgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtaga 200  Q
      || ||| |||||||||||||||||| ||| |||| || |||||||| ||| ||||||||||||||| |||||||||||| |||| ||||||||| |||    
T  8658578 tacggtatctctcagcttcttcaatcattttgttaatttcaaatgttgacaatctttctttttcattgtttatggtgatctggttcatatttcctgaaga 8658677  T
Q  201 catttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagggtgtgtcacgaggagcatctgga---cacaaaagatca 297  Q
     ||||| ||||| ||||| ||||   |||||||| |||  || | ||| |||||||||||||| ||| ||||||||||| |||||   ||  |||| |      
T  8658678 tatttccttagccgaaactgttaaaatgccattttcattgattgaaaaacatacctccaagggagtgccacgaggagcacctggacggcaagaaagtttg 8658777  T
Q  298 aacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 350  Q
    ||||||||||||||||||||||||   |||||||||||||||||||| |||||    
T  8658778 aacgaaccaagcagattgttgtctagcgctcttgctctctcaccctcgtaaac 8658830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 10495422 - 10495162
Alignment:
Q  3 attaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcg 102  Q
    |||||| ||||||||||||||||  ||||| ||||||||||||||| | || ||||||||||||||||| ||||||||||| |||||| |||||||  |     
T  10495422 attaacgtccttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccttaagaatttcatatcttcgaca 10495323  T
Q  103 cgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagaca 202  Q
     | ||||||| |||||||| ||||| |||||||| ||  ||  ||| |||||||||||| ||||| || |||||||||  |||| |||| |||||||| |    
T  10495322 tggtatttcttagcttctttaatcatttttttaatttctaacattgacaacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagata 10495223  T
Q  203 tttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaaggg 263  Q
    | || ||||||| |||||| ||| |||||||| |||| || | ||||||||||||||||||    
T  10495222 tatccttagcagtaacagtcaggatgccattttcatcaatggaaaagcatacctccaaggg 10495162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 8666536 - 8666796
Alignment:
Q  3 attaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcg 102  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| | || ||| ||| ||||||||| ||| | |||||||||| | |||||||| |     
T  8666536 attaacatccttcttctttaaagccttcttcatattgtaaacacaagaatctaattcacacattaccttggcccttcttaaaaattgcatatcttccaca 8666635  T
Q  103 cgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagaca 202  Q
     | |||||||||||||||| ||||| ||||| ||  |  ||  ||| |||||||||||| |||||||||||||||||| ||||| |||| ||||| || |    
T  8666636 tggtatttctcagcttctttaatcattttttcaatgtcgaacattgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggata 8666735  T
Q  203 tttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaaggg 263  Q
    ||||  |||||| |||||| ||| | |||||| |||| || | ||||||||||||||||||    
T  8666736 tttccctagcagtaacagtcaggataccattttcatcaattgaaaagcatacctccaaggg 8666796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 8653567 - 8653824
Alignment:
Q  6 aacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcga 105  Q
    |||||||||| | || |||||| |||| ||||||||||||||| | |||||||| || ||||| || |||||||| ||||||||| |||||||| | ||     
T  8653567 aacatccttcatattcaaagcactctttatattgtaaacacaagaatccaatgcgcttattactttggccttcctcaaaaatttcatatcttccacacgg 8653666  T
Q  106 tatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacattt 205  Q
    |||||||||||||||||||||  ||||| || || |||  ||| |||||||||||| ||||| || |||||||||| ||||  | |||| || |  || |    
T  8653667 tatttctcagcttcttcaatctttttttcaatttcaaactttgacaacctttctttctcattagtgatggtgatctcgttcagaattccagtggtgatat 8653766  T
Q  206 ctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaaggg 263  Q
    | ||| |||||||||||| | | |||||| |||| || | ||||||||||||||||||    
T  8653767 ccttaccagaaacagttaagataccattttcatcaatggaaaagcatacctccaaggg 8653824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 13334416 - 13334156
Alignment:
Q  3 attaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcg 102  Q
    |||||| || |||||||||||||  ||||| ||||||||||||||| | || |||||| |||||||||| ||||||||||| ||||||||||||||  |     
T  13334416 attaacgtctttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgaca 13334317  T
Q  103 cgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagaca 202  Q
     | |||| || |||||||| ||||| ||||| || ||  ||  |||  ||||||||||| ||||| || |||||||||  |||| |||| |||||||| |    
T  13334316 tggtattccttagcttctttaatcattttttcaatttctaacattgataacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagata 13334217  T
Q  203 tttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaaggg 263  Q
    | || ||||||| ||| || ||| |||||||| |||| || | ||||||||||||||||||    
T  13334216 tatccttagcagtaaccgtcaggatgccattttcatcaatggaaaagcatacctccaaggg 13334156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 8672120 - 8671990
Alignment:
Q  3 attaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcg 102  Q
    ||||||||  ||||||| |||||| ||||| ||||||||||||||| | || ||||||| ||||||||| ||| | |||||||||| | |||||||| |     
T  8672120 attaacattgttcttctctaaagcgttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccaca 8672021  T
Q  103 cgatatttctcagcttcttcaatcagttttt 133  Q
     |||||||||||||||||| ||||| |||||    
T  8672020 tgatatttctcagcttctttaatcatttttt 8671990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 357
Target Start/End: Complemental strand, 8586756 - 8586400
Alignment:
Q  4 ttaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgc 103  Q
    |||| |||||| ||||||| ||||||| | |  ||||||||||||   || |||| | |||||||||||||||||||||  ||||||| ||| ||  ||     
T  8586756 ttaatatccttattctttagagcattccttaacttgtaaacacaatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcagcga 8586657  T
Q  104 gatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacat 203  Q
    | ||   ||| ||||||| ||||||| |||||| || |   |  |  ||||||||||| ||||||||||| || || | ||| ||||| || |  || ||    
T  8586656 ggtacacctctgcttcttgaatcagtcttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcgtttgtattgccagaggatat 8586557  T
Q  204 ttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagggtgtgtcacgaggagcatctgga---cacaaaagatcaaac 300  Q
    ||| || ||||||||||||||| | |||||| |||| || |  ||||||||||| |||||     ||||||||||| | ||    ||| |||||| |||     
T  8586556 ttccttcgcagaaacagttaggataccattttcatcgatggtgaagcatacctcaaagggatgcccacgaggagcacccgggacgcacgaaagattaaaa 8586457  T
Q  301 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaatt 357  Q
     | |||||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  8586456 aagccaagcagattgttgtcactagctcttgctctctcaccctcataaaccttaatt 8586400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 3146388 - 3146731
Alignment:
Q  7 acatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgat 106  Q
    ||||||||||||||||||||||| || || |||||||||||| | || |||||| ||||||| || |||||||||| |||||| | ||| ||  | || |    
T  3146388 acatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttccttagaaatttttcatcctcaacacggt 3146487  T
Q  107 atttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttc 206  Q
    | || ||||||||||  |||| |||| ||| ||     | || ||| |||||||| ||||| ||||  || ||||  |||||| | || || ||  ||||    
T  3146488 aattttcagcttctttgatcatttttataatttcttgggatgacaatctttctttgtcattagttactgtaatctcattcgtactaccagtggatttttc 3146587  T
Q  207 tttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctc-caagggtgtgtcacgaggagca-tctggacacaaaagatcaaacgaac 304  Q
     |||||||||||| ||| | |||||||| |||  |||| ||||||||||||  |||||||   | ||||||||| |  |||||  |||||  ||| ||||    
T  3146588 attagcagaaacaattaagatgccattttcattgatagtaaagcatacctcaaaagggtg-accgcgaggagcacttgggaca-gaaagacaaaaagaac 3146685  T
Q  305 caagcagattgttgtctgttgctcttgctctctcaccctcataaac 350  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||    
T  3146686 caagcagattgttgtcactagctcttgctctctcaccctcataaac 3146731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 8646263 - 8646344
Alignment:
Q  269 cacgaggagcatctggacacaaaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 350  Q
    ||||||||||| ||||   | |||||| ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  8646263 cacgaggagcagctgggagccaaagattaaaagaaccaagcagattgttgtcacttgctcttgctctctcaccctcataaac 8646344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 8653306 - 8653402
Alignment:
Q  3 attaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcc 99  Q
    ||||||||||||| | || ||||||||| | ||||| | ||| ||| | |||||||||||||||||| | |||||||||||||||||| ||||||||    
T  8653306 attaacatccttcgtattcaaagcattcgttatattcttaacgcaagaatccaatgcactcattaccgtggccttccttaaaaatttcatatcttcc 8653402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 356
Target Start/End: Original strand, 8615891 - 8616188
Alignment:
Q  62 tcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttcttt 161  Q
    |||||||||| ||||||||||  ||||| | ||||||  |||| || | ||| ||||||| |||||||||||||| || |   |  |  |||||||||||    
T  8615891 tcattaccttggccttccttaggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatcagccgataacctttcttt 8615990  T
Q  162 ttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaag 261  Q
     ||||||||||| || || |  || ||||| || |||||  |||| || ||||| ||||| ||| | |||||  | || || |  |||||||||||||||    
T  8615991 gtcattggttatcgttatttcatttgtattgccagtagatttttccttcgcagatacagtaaggataccattatcgtcgatggtgaagcatacctccaag 8616090  T
Q  262 ggtgtgtcacgaggagcatctgga---cacaaaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaat 356  Q
    ||   ||||| ||||||| | |||   ||| |||||| |||  | |||||||||||||||||  | ||||||| ||||||||||||||||| ||||||    
T  8616091 ggatggtcacaaggagcaccaggagtgcacgaaagataaaaaaatccaagcagattgttgtcactagctcttgatctctcaccctcataaaacttaat 8616188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 485
Target Start/End: Original strand, 8545122 - 8545238
Alignment:
Q  369 attatcttcacgggtagcatattcttctgtcttcttgataggcacagaagtatttctaggaatcaccacactcatggtatcttcatcaacaaggatacca 468  Q
    ||||||||||| ||||| |||  ||| |||||||||||  || ||||||||||| | ||||||||||||||||||  ||| | | |  | || |||||||    
T  8545122 attatcttcaccggtagaataaacttgtgtcttcttgaatggtacagaagtattccaaggaatcaccacactcataatatttccgtgtataaagatacca 8545221  T
Q  469 agtgacaatggggtaac 485  Q
    |||||||| ||||||||    
T  8545222 agtgacaaaggggtaac 8545238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 8616201 - 8616283
Alignment:
Q  403 ttgataggcacagaagtatttctaggaatcaccacactcatggtatcttcatcaacaaggataccaagtgacaatggggtaac 485  Q
    |||| ||| ||||||||||| ||||||||||||||||||||  ||||| | |  || | ||||||||||||||  ||||||||    
T  8616201 ttgacaggtacagaagtattcctaggaatcaccacactcataatatctcctttgactaagataccaagtgacagaggggtaac 8616283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 8666829 - 8666883
Alignment:
Q  296 caaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 350  Q
    |||| |||||||||||||| ||||| |  ||||||| ||||||||||||||||||    
T  8666829 caaatgaaccaagcagattattgtcagcagctcttggtctctcaccctcataaac 8666883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 8653863 - 8653936
Alignment:
Q  302 aaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaattaaggtaccagaattatct 375  Q
    ||||||||||||| |||||  | ||||||| ||||||||||||||||||  ||||  ||| |||| ||||||||    
T  8653863 aaccaagcagattattgtcactagctcttggtctctcaccctcataaacaataatagaggcaccacaattatct 8653936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 8666932 - 8666989
Alignment:
Q  396 tgtcttcttgataggcacagaagtatttctaggaatcaccacactcatggtatcttca 453  Q
    ||||||||||| ||| |  ||||| |||||||||||||||||||||||| ||| ||||    
T  8666932 tgtcttcttgacaggtatggaagtgtttctaggaatcaccacactcatgatatgttca 8666989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 16658558 - 16658214
Alignment:
Q  16 ttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcag 115  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||| |||||   ||||||||||||||||||| || | ||| ||||||    
T  16658558 ttctttaaagcattcttcatattgtaaacacaataatccaatgcattcattaccttggccttttgtaaaaatttcttatcttccacgtggtatctctcag 16658459  T
Q  116 cttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcaga 215  Q
    |||||||||||| |||||||| ||  || |||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||    
T  16658458 cttcttcaatcatttttttaatttccaaggttgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcaga 16658359  T
Q  216 aacagttagggtgccatttgcatctatagcaaagcatacctccaagggtgtgtcacgaggagcatctgga---cacaaaagatcaaacgaaccaagcaga 312  Q
    |||||||||| | |||||| |||| |   |||| ||||| || ||||||  | | ||||||||| |||||   ||  ||||    ||  |||| ||||||    
T  16658358 aacagttaggataccattttcatcgaggtcaaaacatacatctaagggttggccccgaggagcacctggaacgcaagaaaggctgaaaaaaccgagcaga 16658259  T
Q  313 ttgttgtctgttgctcttgctctctcaccctcataaaccttaatt 357  Q
    || ||||| |  |||||||||||||||||||||||||| ||||||    
T  16658258 ttattgtcagcagctcttgctctctcaccctcataaacattaatt 16658214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 43624928 - 43624976
Alignment:
Q  396 tgtcttcttgataggcacagaagtatttctaggaatcaccacactcatg 444  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  43624928 tgtcttcttgacaggtacagaagtattcctaggaatcaccacactcatg 43624976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 43624819 - 43624887
Alignment:
Q  290 aaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaatta 358  Q
    |||||| ||| ||||||| ||||||||||||  || ||| ||||||||||| ||||||||||| |||||    
T  43624819 aaagattaaaagaaccaatcagattgttgtcacttactcatgctctctcacactcataaacctcaatta 43624887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 7541645 - 7541699
Alignment:
Q  302 aaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaat 356  Q
    ||||||||| |||||| ||  | |||||||||||||||||||||||||| |||||    
T  7541645 aaccaagcaaattgttatcactggctcttgctctctcaccctcataaacattaat 7541699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 12246156 - 12246096
Alignment:
Q  301 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaattaagg 361  Q
    |||||||||| |||||||||  | ||| ||| |||||||||||| ||||||||||| ||||    
T  12246156 gaaccaagcaaattgttgtcactggcttttgttctctcaccctcgtaaaccttaatcaagg 12246096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 350
Target Start/End: Complemental strand, 9336942 - 9336595
Alignment:
Q  3 attaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcg 102  Q
    ||||||||  |||||||||||||| ||||| ||||||||||||||| | || ||||||| ||||||||| ||| | |||||||||| | |||||||| |     
T  9336942 attaacattgttcttctttaaagcgttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccaca 9336843  T
Q  103 cgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagaca 202  Q
     |||||||| ||||||||| ||||| ||||| ||  |  ||  ||| |||||||||||| ||||| || ||||||||   |||| |||| |||||||| |    
T  9336842 tgatatttcgcagcttctttaatcattttttcaatgtcgaacattgacaacctttctttgtcattagtaatggtgattgcgttcatattgcctgtagata 9336743  T
Q  203 tttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagggtgtgtcacgaggagcatctggacacaaaagatcaaacga 302  Q
    ||||  |||||| |||||||||| |||||||| |||| || | ||||||  ||||||||||   | |||| |||||     ||||   |||   ||| ||    
T  9336742 tttccctagcagtaacagttaggatgccattttcatcaatcgaaaagcaggcctccaagggatggccacggggagctggaagacaatgaagccgaaatga 9336643  T
Q  303 accaagcagattgttgtctgttgctcttgctctctcaccctcataaac 350  Q
    |||||||||||| ||||| || ||||||| ||||||||||||||||||    
T  9336642 accaagcagattattgtcagtagctcttggtctctcaccctcataaac 9336595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 30774670 - 30774725
Alignment:
Q  301 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaat 356  Q
    ||||| |||||||||||||| |   ||||||||||||||||||||||||| |||||    
T  30774670 gaacctagcagattgttgtccgcgactcttgctctctcaccctcataaacattaat 30774725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 444
Target Start/End: Complemental strand, 9336546 - 9336498
Alignment:
Q  396 tgtcttcttgataggcacagaagtatttctaggaatcaccacactcatg 444  Q
    ||||||||||| ||| |  ||||| ||||||||||||||||||||||||    
T  9336546 tgtcttcttgacaggtatggaagtgtttctaggaatcaccacactcatg 9336498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 43744223 - 43744289
Alignment:
Q  290 aaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaat 356  Q
    ||||| |||| ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  43744223 aaagagcaaaagaaccaagcagattgttgtcacttgctcttgctctctcaccctcataaactttaat 43744289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 53416997 - 53416876
Alignment:
Q  112 tcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttag 211  Q
    |||||||||||||||| ||||| ||  | || ||||| |||||||||||| ||| |||||||||| |||| |||| |||||| | |||| ||||| ||||    
T  53416997 tcagcttcttcaatcattttttcaatatcaattgttgacaacctttctttgtcactggttatggt-atctagttcttatttcttctagatatttccttag 53416899  T
Q  212 cagaaacagttagggtgccattt 234  Q
    |||||||||||||| | ||||||    
T  53416898 cagaaacagttaggataccattt 53416876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 53417432 - 53417564
Alignment:
Q  110 tctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttcttt 209  Q
    |||||||||||||||| | ||||| || || || | ||| | ||||||| || | | ||||||||||||||| |||| |||||| | |||  ||||| ||    
T  53417432 tctcagcttcttcaattattttttcaatttcaattattgaccacctttccttgttaatggttatggtgatctcgttcttatttcttctagttatttcctt 53417531  T
Q  210 agcagaaacagttagggtgccatttgcatctat 242  Q
    ||||||||| |||||| | |||||| |||||||    
T  53417532 agcagaaacggttaggataccattttcatctat 53417564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 53416809 - 53416761
Alignment:
Q  301 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaa 349  Q
    |||||||||||||| ||||| || ||||||| |||||||||||||||||    
T  53416809 gaaccaagcagattattgtcagtagctcttggtctctcaccctcataaa 53416761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 28219326 - 28219385
Alignment:
Q  291 aagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 350  Q
    ||||||||| ||||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  28219326 aagatcaaaagaaccaagcagattgttgtcacttgcttttgctctctcaccctcataaac 28219385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 28910500 - 28910589
Alignment:
Q  9 atccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttc 98  Q
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T  28910500 atccttcttgtttaaatcattcttcatcttgtaaacacaataatgtaatgcattcattacattggcctttcttagaaatttttcatcttc 28910589  T

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