View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_high_5 (Length: 471)
Name: NF6428_high_5
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 15 - 452
Target Start/End: Complemental strand, 35899812 - 35899375
Alignment:
| Q |
15 |
gaaacgttctatacgacttgagggaaacccatttaacgaggatcgttttatcaacaccaaggaccttgttaagtcttcagacccgaggggtttgttaggt |
114 |
Q |
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| T |
35899812 |
gaaacgttctatacgacttgagggaaacccatttaacgaggatcgttttatcaacaccaaggaccttgttaagtcttcagacccgaggggtttgttaggt |
35899713 |
T |
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| Q |
115 |
aatctttaagatttacttgtgcttatatttgatttgacgatttatttactgatttcgttgttttctcgtttgaagttaacatggctggactacaagaaaa |
214 |
Q |
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| T |
35899712 |
aatctttaagatttacttgtgcttatatttgatttgacgatttatttactgatttcgttgttttctcgtttgaagttaacatggctggactacaagaaaa |
35899613 |
T |
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| Q |
215 |
gctgaagaaactaagtatgaagcctggagtttggtcgactgggtcaaagaggaaggaccctcgcagtctcaacgcgctcttggctagggctacaggctca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35899612 |
gctgaagaaactaagtatgaagcctggagtttggtcgactgggtcaaagaggaaggaccctcgcggtctcaacgcgctcttggctagggctacaggctca |
35899513 |
T |
|
| Q |
315 |
tcttctcaggtcggctctcctgctgctacagtcgttggcccacaactcgaccggtttgggtcgtctcaacatatggtgatggatattgatgaccagtctg |
414 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35899512 |
tcttctcaggtcggctctcctgctgctacagccgttggcccacaactcgaccggtttgggtagtctcaacatatggtgatggatattgatgaccagtctg |
35899413 |
T |
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| Q |
415 |
tgacgaagaagtaagggttgagataggtaagtctgtgc |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35899412 |
tgacgaagaagtaagggttgagataggtaagtctgtgc |
35899375 |
T |
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