View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_low_10 (Length: 313)
Name: NF6428_low_10
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 1884998 - 1885303
Alignment:
| Q |
1 |
ctacacttgctgatctattaattccttgttataataaaggagagacaatgatgtatgatgttgatcttgttatgaggctgcttgagcattttcttgtaca |
100 |
Q |
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| T |
1884998 |
ctacacttgctgatctattaattccttgttataataaaggagagacaatgatgtatgatgttgatcttgttatgaggctgcttgagcattttcttgtaca |
1885097 |
T |
|
| Q |
101 |
agaagtgactgaaaattctagtccgaaaagacagtcattttctgagaaacatatgggattgggatgtaaccttaatgctaaagcaagagtagcaagactt |
200 |
Q |
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| T |
1885098 |
agaagtgactgaaaattctagtccgaaaagacagtcattttctgagaaacatatgggattgggatgtaaccttaatgctaaagcaagagtagcaagactt |
1885197 |
T |
|
| Q |
201 |
gttgacagttatcttacagaggtttcaagagatagaaacctttcattgacaaagtttcaggtacttgctgaagctttgcctgaatcagctagaacctgtg |
300 |
Q |
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| T |
1885198 |
gttgacagttatcttacagaggtttcaagagatagaaacctttcattgacaaagtttcaggtacttgctgaagctttgcctgaatcagctagaacctgtg |
1885297 |
T |
|
| Q |
301 |
atgatg |
306 |
Q |
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|||||| |
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| T |
1885298 |
atgatg |
1885303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 37214003 - 37213870
Alignment:
| Q |
160 |
tgggatgtaaccttaatgctaaagcaagagtagcaagacttgttgacagttatcttacagaggtttcaagagatagaaacctttcattgacaaagtttca |
259 |
Q |
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| T |
37214003 |
tgggaagtaacctgaatgccaaggcaagagtggcaaggcttgtggacagttatcttacagaggtatctagagatagaaacctttcatcgacaaagtttca |
37213904 |
T |
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| Q |
260 |
ggtacttgctgaagctttgcctgaatcagctaga |
293 |
Q |
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| T |
37213903 |
ggttcttgcagaagctttacctgagtcagctaga |
37213870 |
T |
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