View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_low_11 (Length: 312)
Name: NF6428_low_11
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 2 - 301
Target Start/End: Complemental strand, 43069286 - 43068987
Alignment:
| Q |
2 |
gttttaaagattgctgctgatgttgaattgcttgtgcggaccttcgttctgttctgattttatcttcttcattttgtttgtaaatattgcatattgcaaa |
101 |
Q |
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| T |
43069286 |
gttttaaagatggctgctgatgttgaattgcttgtgcggaccttcgttctgttctgattttatcttcttcattttgtttgtaaatattgcatattgcaaa |
43069187 |
T |
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| Q |
102 |
gccattagtgtttgcactgttagcttttatactgtttgttttatgaatattttctttaggctatacttcctatatggcgtattttactcggattgtttat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43069186 |
gccattagtgtttgcactgttagcttttatactgtttgttttatgaatattttctttaggctatacttcctatatggcatattttactcggattgtttat |
43069087 |
T |
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| Q |
202 |
tggttctgcttatttttagtcactcaattgacagggacaatgtggtaggaatttactacctatgctagtccatttattgttggcactagctacgtcctat |
301 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069086 |
tggttctgcttatttttagtcactcaattaacagggccaatgtggtaggaatttattagctatgctagtccatttattgttggcactagctacgtcctat |
43068987 |
T |
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