View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_low_12 (Length: 247)
Name: NF6428_low_12
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 36981345 - 36981584
Alignment:
| Q |
1 |
ttcttattgagtaaagaattatatgcaacaatgtcaagtttaatgcctaacttaagcattatagggattacagacttggcaactttaagtttcccctctt |
100 |
Q |
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| T |
36981345 |
ttcttattgagtaaagaattatatgcaacaatgtcaagtttaatgcctaacttaagcattacagggattacagacttggcaacattaagtttcccctctt |
36981444 |
T |
|
| Q |
101 |
tgcataatgcttctatcggtgtagaatatgtgaacaagtcaggaactactttatgactcttcatttggtgcaagagagaaagagcttcaaattggttgac |
200 |
Q |
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| T |
36981445 |
tgcataatgcttctatcagtgtagtatatgtgaacaagtcaggaactactttatgactcttcatttggtgcaagagaggaagagttttaaattggttg-- |
36981542 |
T |
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| Q |
201 |
acacacaattgtgcatataagagtattaaaagtgatgatgtc |
242 |
Q |
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| T |
36981543 |
acacacaaatatgcatataagagtattaaaagtgatgatgtc |
36981584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 37502752 - 37502534
Alignment:
| Q |
12 |
taaagaattatatgcaacaatgtcaagtttaatgcctaacttaagcattatagggattacagacttggcaactttaagtttcccctctttgcataatgct |
111 |
Q |
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| T |
37502752 |
taaagagttatatgaaacaatatcaggtttaatacctaacctaagcattctagggataatagatttggccacttgaagcttcccctctttgcataatgat |
37502653 |
T |
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| Q |
112 |
tctatcggtgtagaatatgtgaacaagtcaggaactactttatgactcttcatttggtgcaagagagaaagagcttcaaattggttgacacacacaattg |
211 |
Q |
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| T |
37502652 |
tgtatcaatgttgtgtatgtgtacatgtcaagaactactttataactcttcatttggtgcaagagataaagagcttgaaattggttgatacatgcaaaca |
37502553 |
T |
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| Q |
212 |
tgcatataagagtattaaa |
230 |
Q |
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| T |
37502552 |
tgcatacaagagtattaaa |
37502534 |
T |
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