View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_low_14 (Length: 239)
Name: NF6428_low_14
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 7174690 - 7174906
Alignment:
| Q |
9 |
cagagcggagcttatggacaaatggcaaatgaggannnnnnngaataaataaaagtaagagatgaaattatggtgtcgtatttattttccatttcttaga |
108 |
Q |
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| T |
7174690 |
cagagaggagcttatggacaaatggcaaatgaggatttttttgaataaataaaagtaagagatgaaattatggtgtcgtatttattttccatttcttaga |
7174789 |
T |
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| Q |
109 |
gactatttcctttgatgttagccaacaataacaaactaacaaaccctaaaagaattactattccattgcacttgaagacaactaaaattcttattcattc |
208 |
Q |
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| T |
7174790 |
gactatttcctttgatgttagccaacaa--------taacaaaccctaaaagaattactatcccattgcacttgaagacaactaaaattcttattcattc |
7174881 |
T |
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| Q |
209 |
atatttcacatcatcatacatcaaa |
233 |
Q |
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|||||||||| |||||||||||||| |
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| T |
7174882 |
atatttcacagcatcatacatcaaa |
7174906 |
T |
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