View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_low_16 (Length: 228)
Name: NF6428_low_16
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_low_16 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 52605 - 52394
Alignment:
| Q |
1 |
gattgattgaagagaattaagcatctaaggtagccatggctgaaattgagcctccaccacttcttcaggtaatatataataaactgctaattagtaattt |
100 |
Q |
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| T |
52605 |
gattaattgaagagaactaagcatctaaggtagccatggctgaaattgagcctccaccacgtcttcaggtaatatataataaactgctaattagtaattt |
52506 |
T |
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| Q |
101 |
aatcattatttaatactgtagctaaacatgaattattgcatcatttaaattttttggcattgacagggaaaatttgctgcaatgttggtttgctggattc |
200 |
Q |
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| T |
52505 |
aattattatttaatact---gctaaacatgaattatttcatcatttaaatttttgggcattgacagggaaaatttgctgcaatgttggtttgctggattc |
52409 |
T |
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| Q |
201 |
ttggcaatggggttc |
215 |
Q |
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| T |
52408 |
ttggcaatggggttc |
52394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 31523032 - 31523184
Alignment:
| Q |
63 |
cttcaggtaatatataataaactgctaattagtaatttaatcattatttaatactgtagctaaacatgaattattgcatcatttaaattttttggcattg |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||| |
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| T |
31523032 |
cttcaggtaatatataataaactgctaattagtaatttaattattatttaatactttatctaaacatgaatgatttcatcatttaaattttttggcattg |
31523131 |
T |
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| Q |
163 |
acagggaaaatttgctgcaatgttggtttgctggattcttggcaatggggttc |
215 |
Q |
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| T |
31523132 |
gcagggaaaatttgctgcaatggtggtttgctggattcttggcaatggggttc |
31523184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 21088467 - 21088545
Alignment:
| Q |
1 |
gattgattgaagagaattaagcatctaaggtagccatggctgaaattgagcctccaccacttcttcaggtaatatataa |
79 |
Q |
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|||||||| |||||||||||||||||||||||||||||| | |||| ||||||||| |||| ||||||||||||| |
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| T |
21088467 |
gattgattaaagagaattaagcatctaaggtagccatggtcatgagtgagactccaccacgtcttgaggtaatatataa |
21088545 |
T |
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