View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6428_low_2 (Length: 610)

Name: NF6428_low_2
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6428_low_2
NF6428_low_2
[»] chr5 (5 HSPs)
chr5 (18-610)||(7175054-7175668)
chr5 (573-610)||(4206313-4206350)
chr5 (565-610)||(27144442-27144487)
chr5 (566-610)||(19820429-19820473)
chr5 (566-602)||(42488096-42488132)
[»] chr4 (4 HSPs)
chr4 (572-610)||(22440635-22440673)
chr4 (572-610)||(903908-903946)
chr4 (563-610)||(34200306-34200351)
chr4 (572-608)||(56049863-56049899)
[»] chr8 (2 HSPs)
chr8 (565-610)||(31109553-31109598)
chr8 (566-610)||(24669413-24669457)
[»] scaffold0022 (1 HSPs)
scaffold0022 (566-610)||(90823-90867)
[»] chr7 (12 HSPs)
chr7 (566-610)||(598188-598232)
chr7 (566-610)||(5235966-5236010)
chr7 (566-610)||(20549771-20549815)
chr7 (566-610)||(21139028-21139072)
chr7 (566-609)||(26329418-26329461)
chr7 (562-608)||(25791629-25791675)
chr7 (566-610)||(1433434-1433478)
chr7 (566-610)||(2425768-2425812)
chr7 (570-610)||(5233613-5233653)
chr7 (566-610)||(22484005-22484049)
chr7 (566-610)||(26733284-26733328)
chr7 (566-610)||(48246848-48246892)
[»] chr6 (6 HSPs)
chr6 (566-610)||(13851716-13851760)
chr6 (566-610)||(25038106-25038150)
chr6 (567-610)||(677818-677861)
chr6 (572-610)||(5732545-5732583)
chr6 (566-610)||(7625102-7625146)
chr6 (566-610)||(19147822-19147866)
[»] chr3 (4 HSPs)
chr3 (566-610)||(11658795-11658839)
chr3 (562-610)||(6525715-6525763)
chr3 (578-610)||(16192785-16192817)
chr3 (563-607)||(21720741-21720785)
[»] chr2 (9 HSPs)
chr2 (563-610)||(29970584-29970630)
chr2 (563-610)||(30527630-30527677)
chr2 (566-608)||(23718006-23718048)
chr2 (566-608)||(24105678-24105720)
chr2 (566-607)||(6736470-6736511)
chr2 (573-610)||(37497107-37497144)
chr2 (566-602)||(10547973-10548009)
chr2 (578-610)||(22084867-22084899)
chr2 (562-610)||(39323240-39323288)
[»] chr1 (5 HSPs)
chr1 (563-610)||(36878438-36878485)
chr1 (566-610)||(17754291-17754335)
chr1 (574-610)||(20157385-20157421)
chr1 (566-610)||(37055891-37055935)
chr1 (566-610)||(38503300-38503344)
[»] scaffold0018 (1 HSPs)
scaffold0018 (572-610)||(192284-192322)
[»] scaffold1528 (1 HSPs)
scaffold1528 (566-610)||(1015-1059)
[»] scaffold0085 (1 HSPs)
scaffold0085 (566-610)||(26373-26417)


Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 18 - 610
Target Start/End: Complemental strand, 7175668 - 7175054
Alignment:
Q  18 aaaatgatgaagaatttgttgctacaagacatattgttgggacaagaggttacatggctcctgagtatttggaaaatggtcttgtttctacaaagcttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7175668 aaaatgatgaagaatttgttgctacaagacatattgttgggacaagaggttacatggctcctgagtatttggaaaatggtcttgtttctacaaagcttga 7175569  T
Q  118 tgtgtatgcatttggtattttgatgttggaaattattacaggaaaagaggttggttttatgatatcaaaagataatgagaatttgttggatgttttgagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7175568 tgtgtatgcatttggtattttgatgttggaaattattacaggaaaagaggttggttttatgatatcaaaagataatgagaatttgttggatgttttgagt 7175469  T
Q  218 ggaatacttggtgagaaaagtggtgatgagaagttgaaggagtttatggatccttcattgcaaggaaattatccatttgaacttgctatgtttgtgattg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7175468 ggaatacttggtgagaaaagtggtgatgagaagttgaaggagtttatggatccttcattgcaaggaaattatccatttgaacttgctatgtttgtgattg 7175369  T
Q  318 aaattattcagaattgtttaaacaaggatccaggaaatagacctgctatggatgagattgtatcagttttgtcaagaacattgaattcttcattgagttg 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7175368 aaattattcagaattgtttaaacaaggatccaggaaatagacctgctatggatgagattgtaccagttttgtcaagaacattgaattcttcattgagttg 7175269  T
Q  418 ggaaatgtaagtgaatgttcctagaaactaagggttaagcagggcctcttgatgttgaag---------aaggatacttagatcagtcaatggtattatg 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  7175268 ggaaatgtaagtgaatgttcctagaaactaagggttaagcagggcctcttgatgttgaagaagttgaaaaaggatacttagatcagtcaatggtattatg 7175169  T
Q  509 tgtttgttaagttcttgttttgtttgtcaatatgtcatatgttagtactaatc-------------tacggacacagacactgacacatcgacaccgtta 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||             ||| ||||| ||||||||||||||||||||||||    
T  7175168 tgtttgttaagttcttgttttgtttgtcaatatgtcatatgttagtactaatctatgaagcatggatacagacacggacactgacacatcgacaccgtta 7175069  T
Q  596 ataatttgagaaaat 610  Q
    |||||||||||||||    
T  7175068 ataatttgagaaaat 7175054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 610
Target Start/End: Original strand, 4206313 - 4206350
Alignment:
Q  573 acactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||| || ||||||||||||||||||||||||    
T  4206313 acactgacacgtcaacaccgttaataatttgagaaaat 4206350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 610
Target Start/End: Original strand, 27144442 - 27144487
Alignment:
Q  565 ggacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||||||||||||  |||||||| |||||||||||| ||||    
T  27144442 ggacacagacactgacacgccgacaccgctaataatttgaggaaat 27144487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Complemental strand, 19820473 - 19820429
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||| |||||||||||  |||||||| |||||||||||||||||    
T  19820473 gacacggacactgacactccgacaccgctaataatttgagaaaat 19820429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 602
Target Start/End: Complemental strand, 42488132 - 42488096
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataattt 602  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  42488132 gacacagacactgacacgtcgacaccgttgataattt 42488096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 572 - 610
Target Start/End: Complemental strand, 22440673 - 22440635
Alignment:
Q  572 gacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  22440673 gacactgatacatcgacaccgttaataatttgagaaaat 22440635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 572 - 610
Target Start/End: Original strand, 903908 - 903946
Alignment:
Q  572 gacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||| || |||||||||||||||||||||||    
T  903908 gacactgacacaccggcaccgttaataatttgagaaaat 903946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 610
Target Start/End: Complemental strand, 34200351 - 34200306
Alignment:
Q  563 acggacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||||||||| ||||||||  |||| |||||||||||||||||    
T  34200351 acggacacagacacttacacatcg--accgctaataatttgagaaaat 34200306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 608
Target Start/End: Original strand, 56049863 - 56049899
Alignment:
Q  572 gacactgacacatcgacaccgttaataatttgagaaa 608  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  56049863 gacacggacacatcgacaccgataataatttgagaaa 56049899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 565 - 610
Target Start/End: Complemental strand, 31109598 - 31109553
Alignment:
Q  565 ggacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||    
T  31109598 ggacacggacactgacacgccgacaccgttaataatttgagaaaat 31109553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 24669413 - 24669457
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||||||||   |||||||||||||||||||| ||||    
T  24669413 gacacagacactgacacgctgacaccgttaataatttgaggaaat 24669457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 90823 - 90867
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||||||||| | ||||| ||||||||||||||||||    
T  90823 gacacagacactgacacaccaacaccattaataatttgagaaaat 90867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 598188 - 598232
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||    
T  598188 gacacggacactgacacatcgacaccgctaataatttaagaaaat 598232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 5235966 - 5236010
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||    
T  5235966 gacacagacactgacacgtcgacaccgctaataatttaagaaaat 5236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 20549771 - 20549815
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||    
T  20549771 gacacatacactgacacaccgacaccgctaataatttgagaaaat 20549815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 610
Target Start/End: Complemental strand, 21139072 - 21139028
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||||||||||  || ||||||||||||||||||||||||    
T  21139072 gacacagacactgacatgtcaacaccgttaataatttgagaaaat 21139028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 566 - 609
Target Start/End: Complemental strand, 26329461 - 26329418
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaa 609  Q
    |||||||||||||||||  ||||| |||||||||||||||||||    
T  26329461 gacacagacactgacacgccgacatcgttaataatttgagaaaa 26329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 562 - 608
Target Start/End: Original strand, 25791629 - 25791675
Alignment:
Q  562 tacggacacagacactgacacatcgacaccgttaataatttgagaaa 608  Q
    |||||||||||||||||||||  |||||||| |||| ||||||||||    
T  25791629 tacggacacagacactgacacgccgacaccgctaattatttgagaaa 25791675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 1433434 - 1433478
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||| |||| ||||||  ||||||||||||||||||||||||||    
T  1433434 gacacggacattgacacgccgacaccgttaataatttgagaaaat 1433478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Complemental strand, 2425812 - 2425768
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||| ||||||||  || |||||||||||||||||||||||    
T  2425812 gacacagatactgacacgccggcaccgttaataatttgagaaaat 2425768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 610
Target Start/End: Original strand, 5233613 - 5233653
Alignment:
Q  570 cagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||||| ||| || |||||||||||||||||||    
T  5233613 cagacactgacacaccgatacggttaataatttgagaaaat 5233653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 22484005 - 22484049
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||||||||  |||||||| ||||||||| |||||||    
T  22484005 gacacagacactgacacgccgacaccgctaataattttagaaaat 22484049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 26733284 - 26733328
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||| ||||||||||| ||||||||| ||||||||||| |||||    
T  26733284 gacacggacactgacacgtcgacaccgctaataatttgacaaaat 26733328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Complemental strand, 48246892 - 48246848
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||| |||||| ||||||| |||| ||||||||||||||    
T  48246892 gacacagacaatgacacgtcgacactgttattaatttgagaaaat 48246848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 13851716 - 13851760
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||    
T  13851716 gacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 610
Target Start/End: Complemental strand, 25038150 - 25038106
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||| |||||||| | |||||||||||||||||||||||||    
T  25038150 gacacagatactgacacgttgacaccgttaataatttgagaaaat 25038106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 677818 - 677861
Alignment:
Q  567 acacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||||||||||  |||||| |||||||||||||||||||    
T  677818 acacagacactgacacgccgacactgttaataatttgagaaaat 677861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 572 - 610
Target Start/End: Complemental strand, 5732583 - 5732545
Alignment:
Q  572 gacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  5732583 gacactgacacgccgacaccgttaataatttgagaaaat 5732545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 7625102 - 7625146
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||||| ||||| ||||||| | |||||||||||||||||    
T  7625102 gacacagacaccgacacgtcgacacggataataatttgagaaaat 7625146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 19147822 - 19147866
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||| |||||||  ||||||||||||||||| |||||||    
T  19147822 gacacagacagtgacacaaagacaccgttaataatttaagaaaat 19147866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 11658795 - 11658839
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||    
T  11658795 gacacagacactgacacaccaacatcgttaataatttgagaaaat 11658839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 610
Target Start/End: Complemental strand, 6525763 - 6525715
Alignment:
Q  562 tacggacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||  |||||||||  ||||||||| |||||||||||||||||    
T  6525763 tacggacacgtacactgacatgtcgacaccgctaataatttgagaaaat 6525715  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 610
Target Start/End: Complemental strand, 16192817 - 16192785
Alignment:
Q  578 gacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||| ||||||||||||||||||||||||||    
T  16192817 gacacaccgacaccgttaataatttgagaaaat 16192785  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 607
Target Start/End: Original strand, 21720741 - 21720785
Alignment:
Q  563 acggacacagacactgacacatcgacaccgttaataatttgagaa 607  Q
    |||||||| |||||||||||  |||||||| ||||||||||||||    
T  21720741 acggacacggacactgacacgccgacaccgataataatttgagaa 21720785  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 610
Target Start/End: Complemental strand, 29970630 - 29970584
Alignment:
Q  563 acggacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  29970630 acggacac-gacactgacacattgacaccgctaataatttgagaaaat 29970584  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 610
Target Start/End: Complemental strand, 30527677 - 30527630
Alignment:
Q  563 acggacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||| |||||||||||| | |||| |||||||||||||||||||    
T  30527677 acggacactgacactgacacacccacactgttaataatttgagaaaat 30527630  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 566 - 608
Target Start/End: Original strand, 23718006 - 23718048
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaa 608  Q
    ||||| |||||||||||| |||||||| |||||||||||||||    
T  23718006 gacacggacactgacacaccgacaccgctaataatttgagaaa 23718048  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 566 - 608
Target Start/End: Original strand, 24105678 - 24105720
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaa 608  Q
    ||||| |||||||||||| |||||||| |||||||||||||||    
T  24105678 gacacggacactgacacaccgacaccgctaataatttgagaaa 24105720  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 607
Target Start/End: Original strand, 6736470 - 6736511
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaa 607  Q
    |||| |||||||||||| ||||||||| ||||||||||||||    
T  6736470 gacaaagacactgacacgtcgacaccggtaataatttgagaa 6736511  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 610
Target Start/End: Original strand, 37497107 - 37497144
Alignment:
Q  573 acactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||||||||| | |||||||||||||||||    
T  37497107 acactgacacatcgacactgataataatttgagaaaat 37497144  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 602
Target Start/End: Complemental strand, 10548009 - 10547973
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataattt 602  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  10548009 gacacggacactgacacgtcgacaccgttaataattt 10547973  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 610
Target Start/End: Complemental strand, 22084899 - 22084867
Alignment:
Q  578 gacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||| ||||||||||||||||||||||||    
T  22084899 gacacatcaacaccgttaataatttgagaaaat 22084867  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 610
Target Start/End: Original strand, 39323240 - 39323288
Alignment:
Q  562 tacggacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||| |||||||| || ||||||||| ||||||||||| |||||    
T  39323240 tacggacacggacactgaaacgtcgacaccgctaataatttgacaaaat 39323288  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 610
Target Start/End: Original strand, 36878438 - 36878485
Alignment:
Q  563 acggacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||| ||||||||||||  |||||||| |||||||||||||||||    
T  36878438 acggacatagacactgacacgccgacaccgctaataatttgagaaaat 36878485  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 17754291 - 17754335
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||| |||||||| |||||||| ||||||||||| |||||    
T  17754291 gacacagacgctgacacaccgacaccgctaataatttgaaaaaat 17754335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 610
Target Start/End: Complemental strand, 20157421 - 20157385
Alignment:
Q  574 cactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  20157421 cactgacacatcgacaccgctaataatgtgagaaaat 20157385  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Complemental strand, 37055935 - 37055891
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||||| ||||||| || | |||||||||||||||||    
T  37055935 gacacagacactgatacatcgatactgctaataatttgagaaaat 37055891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 38503300 - 38503344
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||| |||||| ||||| |||||||| |||||||||||||||||    
T  38503300 gacacggacactaacacaccgacaccgctaataatttgagaaaat 38503344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 572 - 610
Target Start/End: Complemental strand, 192322 - 192284
Alignment:
Q  572 gacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  192322 gacactgacacgccgacaccgttaataatttgagaaaat 192284  T

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Target: scaffold1528 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 1015 - 1059
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    ||||||||| |||||||| |||||||| ||||||||||| |||||    
T  1015 gacacagacgctgacacaccgacaccgctaataatttgaaaaaat 1059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Original strand, 26373 - 26417
Alignment:
Q  566 gacacagacactgacacatcgacaccgttaataatttgagaaaat 610  Q
    |||||||||| |||||| ||||||||  |||||||||||||||||    
T  26373 gacacagacagtgacacgtcgacaccactaataatttgagaaaat 26417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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