View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_low_6 (Length: 413)
Name: NF6428_low_6
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 43069652 - 43069264
Alignment:
| Q |
18 |
caagcactgtccattattaatttgctctcatggatatcaggaggccatatattcct---gaacgggataaatatgaatatgattatccaaataagaaaaa |
114 |
Q |
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| T |
43069652 |
caagcactgtccattattaatttgctctcatggatatcaggaggccgtatattcctcctgcacgggataaatatgaatatgattatccaaataagaaaaa |
43069553 |
T |
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| Q |
115 |
ggacgatgatggtgaagaagaggataattgggaacttttagatgttgatgttccatattcttgaaatttaaatgtagaaacaagcagaaatgaatgaaac |
214 |
Q |
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| T |
43069552 |
ggacgatgatggtgaagaagaggataattgggaacttttagatgttgatgttccatattcttgaaatttaaatgtagaaacaagcagaaatgaatgaaac |
43069453 |
T |
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| Q |
215 |
tttttgaataaaagcatttgactctcttctatgttctccctatgtcaaagtccttctctgtccgaagctgctgctctcactaccctgagacgtaattccc |
314 |
Q |
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| T |
43069452 |
tttttgaataaaagcatttgactctcttctatgttctccctatgtcaaagtccttctctgtccgaagctgctgctctcactaccctgagacgtaattccc |
43069353 |
T |
|
| Q |
315 |
tggctcataactttcactttactccaattacacacatcaaggaaaggaaaatattgcttacttgtagttttaaagatggctgatgatgt |
403 |
Q |
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| T |
43069352 |
tggctcataactttcactttactccaattacacagatcaaggaaaggaaaacattgcttacttatagttttaaagatggctgctgatgt |
43069264 |
T |
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