View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6428_low_9 (Length: 407)
Name: NF6428_low_9
Description: NF6428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6428_low_9 |
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| [»] scaffold0440 (2 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 14378 - 14427
Alignment:
| Q |
217 |
atatcacgcatacaaaactcaatttctcaatcgactaagctggatgagca |
266 |
Q |
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| T |
14378 |
atatcacgcatacaaaactcaatttctcaatcgactaagctggatgagca |
14427 |
T |
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Target: scaffold0440; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 14515 - 14552
Alignment:
| Q |
354 |
ccaacctttaattgaacgatggcaatgaacgaaagaga |
391 |
Q |
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| T |
14515 |
ccaacctttaattgaacgatggctatgaacgaaagaga |
14552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 25456880 - 25456833
Alignment:
| Q |
217 |
atatcacgcatacaaaactcaatttctcaatcgactaagctggatgag |
264 |
Q |
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| T |
25456880 |
atatcacgcatacaaaactcaatttctcattcgactaagctggatgag |
25456833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 25456739 - 25456706
Alignment:
| Q |
358 |
cctttaattgaacgatggcaatgaacgaaagaga |
391 |
Q |
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| T |
25456739 |
cctttaattgaacgatggcgatgaacgaaagaga |
25456706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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