View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6429_high_10 (Length: 426)

Name: NF6429_high_10
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6429_high_10
NF6429_high_10
[»] chr2 (5 HSPs)
chr2 (178-344)||(30736139-30736302)
chr2 (363-411)||(30736311-30736359)
chr2 (127-176)||(3555332-3555381)
chr2 (129-168)||(11349504-11349543)
chr2 (126-168)||(3653376-3653418)
[»] chr8 (4 HSPs)
chr8 (57-177)||(34060570-34060690)
chr8 (127-176)||(34061625-34061674)
chr8 (127-176)||(35634394-35634443)
chr8 (144-176)||(34177284-34177316)
[»] chr1 (1 HSPs)
chr1 (127-176)||(17691301-17691350)
[»] chr7 (5 HSPs)
chr7 (129-168)||(20425568-20425607)
chr7 (130-176)||(42362532-42362578)
chr7 (127-176)||(3914220-3914269)
chr7 (127-168)||(5457204-5457245)
chr7 (127-176)||(13044754-13044803)
[»] chr6 (1 HSPs)
chr6 (127-168)||(26463269-26463310)
[»] chr5 (1 HSPs)
chr5 (127-176)||(11741814-11741863)
[»] chr4 (1 HSPs)
chr4 (144-176)||(39538162-39538194)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 178 - 344
Target Start/End: Original strand, 30736139 - 30736302
Alignment:
Q  178 tgagtttatcgtgcgaaccccacgaatgaattggaatagcaacaagcatgaactctctcttcttccattacttgaaactctattaaacatatcccagtgg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30736139 tgagtttatcgtgcgaaccccacgaatgaattggaatagcaacgagcatgaactctctcttcttccattacttgaaactctattaaacatatcccagtga 30736238  T
Q  278 ttctcatctccattaaacattaagaataatgggcatttgtcaagaattcttacttatggaaatttat 344  Q
    || |||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||    
T  30736239 ttttcatctccattaaacattaagaataatgggtatttgtcaagaa---ttacttatggaaatttat 30736302  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 30736311 - 30736359
Alignment:
Q  363 tatgcatctccattaaacatggcaaccattctcttataaccatggaact 411  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||    
T  30736311 tatgcatctccattaaacatgatagccattctcttataaccatggaact 30736359  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 3555381 - 3555332
Alignment:
Q  127 agtgattaacttggttgagggacgaagttttaaatgattaaagaatgcaa 176  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||||||    
T  3555381 agtgattaactgggttaaaggacgaaattttaaatgattaaagaatgcaa 3555332  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 11349504 - 11349543
Alignment:
Q  129 tgattaacttggttgagggacgaagttttaaatgattaaa 168  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  11349504 tgattaactgggttgagggacgaaattttaaatgattaaa 11349543  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 3653376 - 3653418
Alignment:
Q  126 tagtgattaacttggttgagggacgaagttttaaatgattaaa 168  Q
    |||||||||||||||  |||||||||| |||||||||||||||    
T  3653376 tagtgattaacttggaagagggacgaaattttaaatgattaaa 3653418  T

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Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 34060690 - 34060570
Alignment:
Q  57 ggggtaaaatagtcttttcatggccattttgcatagtcgttctaccacgtcagcaaaaacacttctaattagtgattaacttggttgagggacgaagttt 156  Q
    ||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  34060690 ggggtaaaatagtcttttcatggccattttggatagtcgttttgccacgtcagcaaaaacactcataattagtgattaacttggttgagggatgaagttt 34060591  T
Q  157 taaatgattaaagaatgcaac 177  Q
    |||||||||||||||||||||    
T  34060590 taaatgattaaagaatgcaac 34060570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 34061625 - 34061674
Alignment:
Q  127 agtgattaacttggttgagggacgaagttttaaatgattaaagaatgcaa 176  Q
    |||||||||||||||  | ||||||| |||||||||||||||||||||||    
T  34061625 agtgattaacttggtcaaaggacgaaattttaaatgattaaagaatgcaa 34061674  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 35634394 - 35634443
Alignment:
Q  127 agtgattaacttggttgagggacgaagttttaaatgattaaagaatgcaa 176  Q
    ||||||||| |||||| | ||||||| ||||||||||||||| |||||||    
T  35634394 agtgattaagttggttaaaggacgaaattttaaatgattaaacaatgcaa 35634443  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 34177284 - 34177316
Alignment:
Q  144 agggacgaagttttaaatgattaaagaatgcaa 176  Q
    ||||||||| |||||||||||||||||||||||    
T  34177284 agggacgaaattttaaatgattaaagaatgcaa 34177316  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 17691350 - 17691301
Alignment:
Q  127 agtgattaacttggttgagggacgaagttttaaatgattaaagaatgcaa 176  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||||    
T  17691350 agtggttaacttggttgagggacgaaattttaaatgattaaacaatgcaa 17691301  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 20425607 - 20425568
Alignment:
Q  129 tgattaacttggttgagggacgaagttttaaatgattaaa 168  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  20425607 tgattaacttggttgagggacgaaattttaagtgattaaa 20425568  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 42362578 - 42362532
Alignment:
Q  130 gattaacttggttgagggacgaagttttaaatgattaaagaatgcaa 176  Q
    |||||||| |||| | ||||||| |||||||||||||||||||||||    
T  42362578 gattaactgggttaaaggacgaaattttaaatgattaaagaatgcaa 42362532  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 3914269 - 3914220
Alignment:
Q  127 agtgattaacttggttgagggacgaagttttaaatgattaaagaatgcaa 176  Q
    ||||||||| ||||  |||||||||| ||||||||||||||| |||||||    
T  3914269 agtgattaagttggaagagggacgaaattttaaatgattaaacaatgcaa 3914220  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 5457204 - 5457245
Alignment:
Q  127 agtgattaacttggttgagggacgaagttttaaatgattaaa 168  Q
    ||||||||||| || ||||||||||| |||||||||||||||    
T  5457204 agtgattaactgggatgagggacgaaattttaaatgattaaa 5457245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 13044803 - 13044754
Alignment:
Q  127 agtgattaacttggttgagggacgaagttttaaatgattaaagaatgcaa 176  Q
    ||||||||| || ||| ||||||||| ||||||||||||||| |||||||    
T  13044803 agtgattaagtttgttaagggacgaatttttaaatgattaaacaatgcaa 13044754  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 26463310 - 26463269
Alignment:
Q  127 agtgattaacttggttgagggacgaagttttaaatgattaaa 168  Q
    ||||||||||| || ||||||||||| |||||||||||||||    
T  26463310 agtgattaactgggatgagggacgaaattttaaatgattaaa 26463269  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 11741814 - 11741863
Alignment:
Q  127 agtgattaacttggttgagggacgaagttttaaatgattaaagaatgcaa 176  Q
    ||||||||||| |||  | ||||||| |||||||||||||||||||||||    
T  11741814 agtgattaactgggtcaaaggacgaaattttaaatgattaaagaatgcaa 11741863  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 39538194 - 39538162
Alignment:
Q  144 agggacgaagttttaaatgattaaagaatgcaa 176  Q
    ||||||||| |||||||||||||||||||||||    
T  39538194 agggacgaaattttaaatgattaaagaatgcaa 39538162  T

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