View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_high_12 (Length: 372)
Name: NF6429_high_12
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 18279385 - 18279740
Alignment:
| Q |
8 |
gagaagaagggagaaaatctggataatcttgatgtacaatggatgataatcaatgtggcaaagtttgataatattttgacgtatattggatatatcaaaa |
107 |
Q |
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| T |
18279385 |
gagaagaaggttgaaaatctggataatcttgatgtacaatggatgataatcaatgtggcaaagtttgataatattttgacgtatattggatatatcaaaa |
18279484 |
T |
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| Q |
108 |
gttttacgctaaattttctcgagtctattaagtctttggaggatagaatggaattaaaagggaacttagaaagtgtcaaagttgaaatgcaaactatgga |
207 |
Q |
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| T |
18279485 |
gctttacgctgaattttctcgagtctattaagtctttggaggatagaatggaattaaaagggaacttagaaagtgtcaaagttgaaaagcaaactatgga |
18279584 |
T |
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| Q |
208 |
ggataatttgaattgtctcaaaagctttattatgcgta---------agtaaaatttcttggcttgttaatttctttttcaaagtttaaagcatgaaaaa |
298 |
Q |
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| T |
18279585 |
ggataatttgaattgtctcaaaagctttattatgcgtacttatctcgagtaaaatttcttggcttgttaatttcattttcaaagtttgaagcatgaaaaa |
18279684 |
T |
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| Q |
299 |
ctgtctttaatattctgaaaattttgctcatgatgttaacctctgcatagctaatt |
354 |
Q |
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| T |
18279685 |
ctgtctttaatattctgaaagtattgctcatgatgttaacctctgcatagctaatt |
18279740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 8300840 - 8300494
Alignment:
| Q |
8 |
gagaagaagggagaaaatctggataatcttgatgtacaatggatgataatcaatgtggcaaagtttgataatattttgacgtatattggatatatcaaaa |
107 |
Q |
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| T |
8300840 |
gagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaa |
8300741 |
T |
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| Q |
108 |
gttttacgctaaattttctcgagtctattaagtctttggaggatagaatggaattaaaagggaacttagaaagtgtcaaagttgaaatgcaaactatgga |
207 |
Q |
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| T |
8300740 |
actttacgctgaattttcttgagtctatcaagtctatggaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatgga |
8300641 |
T |
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| Q |
208 |
ggataatttgaattgtctcaaaagcttta-------ttatgcgtaagtaaaatttcttggcttgttaatttctttttcaaagtttaaagcatgaaaaa-- |
298 |
Q |
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| T |
8300640 |
gtacaaaatgaagtgtctcgaaatctttacgcagatctat-ctcgagtaaaatttcttgccttgttaatttcattttcaaagtttgaagaatgaaaaact |
8300542 |
T |
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| Q |
299 |
ctgtctttaatattctgaaaattttgctcatgatgttaacctctgcat |
346 |
Q |
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| T |
8300541 |
ctgtctttaatattctgaaaattttgctcatggtgttaacctctgcat |
8300494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 8 - 337
Target Start/End: Complemental strand, 8297262 - 8296933
Alignment:
| Q |
8 |
gagaagaagggagaaaatctggataatcttgatgtacaatggatgataatcaatgtggcaaagtttgataatattttgacgtatattggatatatcaaaa |
107 |
Q |
| |
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||||||||||||||||||||||||||||| |||| | ||||||||||||| || ||||| | | |||||| |||| || |||| ||||| |||||| |
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| T |
8297262 |
gagaagaagggagaaaatctggataatctggatgaaaaatggatgataattaaggtggctgtgatggataattctttggtgtttattagatatttcaaaa |
8297163 |
T |
|
| Q |
108 |
gttttacgctaaattttctcgagtctattaagtctttggaggatagaatggaattaaaagggaacttagaaagtgtcaaagttgaaatgcaaactatgga |
207 |
Q |
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|| | ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
8297162 |
acttgatgctgaattttctcgagtctatcaagtctatggaggatagaatggaattaaaagggaacttagaaagtatcagagttgaaatgcaaactatgga |
8297063 |
T |
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| Q |
208 |
ggataatttgaattgtctcaaaagcttta-------ttatgcgtaagtaaaatttcttggcttgttaatttctttttcaaagtttaaagcatgaaaaa-- |
298 |
Q |
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|| ||| |||||| |||||||||||||| |||| | |||||||||||||| |||||||||||| ||||| |||||||||||| |
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| T |
8297062 |
gggtaaaatgaattttctcaaaagctttatgcggatttat-ctctagtaaaatttcttgccttgttaatttc--------agtttgaagcatgaaaaact |
8296972 |
T |
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| Q |
299 |
ctgtctttaatattctgaaaattttgctcatgatgttaa |
337 |
Q |
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|||| ||||| |||||||||||| ||||||||||||||| |
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| T |
8296971 |
ctgtatttaacattctgaaaattctgctcatgatgttaa |
8296933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 45 - 354
Target Start/End: Complemental strand, 1145427 - 1145113
Alignment:
| Q |
45 |
aatggatgataatcaatgtggcaaagtttgataatattttgacgtatattggatatatcaaaagttttacgctaaattttctcgagtctattaagtcttt |
144 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| | || || ||| ||||| ||||| || ||||||||||||||||| |||| | | |
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| T |
1145427 |
aatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacactgaattttctcgagtctatcaagtatct |
1145328 |
T |
|
| Q |
145 |
ggaggatagaatggaattaaaagggaacttagaaagtgtcaaagttgaaatgcaaactatggaggataatttgaattgtctcaaaagcttta-------t |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| ||| ||| ||| ||||||||| | |
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| T |
1145327 |
ggaggatagaatggaattaaaagggaacttagaaagtatcagaattgaaatgcaaactatggaggataaaatgatttggctcgaaagctttatgcggatt |
1145228 |
T |
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| Q |
238 |
tatgcgtaagtaaaatttcttggcttgttaatttctttttcaaagtttaaagcatgaaaaactgtctttaatattctgaaaattttgctcatgatgttaa |
337 |
Q |
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||| | |||||||| ||||| || ||||||||| |||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||| ||| |
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| T |
1145227 |
tat-ctcgagtaaaatatcttgcctggttaatttcattttcaaagtttgaagcatgaaaaactctgtttaatattctgaaaattttgctcttgatg-taa |
1145130 |
T |
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| Q |
338 |
cctctgcatagctaatt |
354 |
Q |
| |
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||||||| | ||||||| |
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| T |
1145129 |
cctctgctttgctaatt |
1145113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 21120537 - 21120589
Alignment:
| Q |
160 |
attaaaagggaacttagaaagtgtcaaagttgaaatgcaaactatggaggata |
212 |
Q |
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|||||| | |||||| |||||| ||| |||||||||||||||||||||||||| |
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| T |
21120537 |
attaaacgagaacttggaaagtctcagagttgaaatgcaaactatggaggata |
21120589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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