View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_high_14 (Length: 362)
Name: NF6429_high_14
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 45722425 - 45722088
Alignment:
| Q |
17 |
agatagtggtcactagtgttcataacaacaacagtagagatatgatggagacattacatcgcaggaccaatgtattaatctctttgtcttgctaaactgc |
116 |
Q |
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| T |
45722425 |
agatagtggtcactagtgttcataacaacaacagtagagatatgatggagacattacatcgcaggaccaatgtattaatctctttgtcttgctaaactgc |
45722326 |
T |
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| Q |
117 |
aaagttcagtttatatgttcacggggacgagccacatttctttctaatacacagggaacggataactatgaataaaagagcatctccaatgctaaagatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45722325 |
aaagttcagtttatatgttcacggggacgagccacatttctttctaatacacagggaacggataactatgaataaaagagcatctccaatgctaaagatt |
45722226 |
T |
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| Q |
217 |
aagaccggttcataatttcattttttgtgggtccaacataatgttctttgttttacattaaattcggtcccatatgctattatttcttctcccacatctc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45722225 |
aagaccggttcataatttcattttttgtgggtccaacataatgttctttgttttacattaaattcggtcccatatactattatttcttctcccacatctc |
45722126 |
T |
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| Q |
317 |
tactttctcacatctccactttttaccctctctctgct |
354 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
45722125 |
tactttctcacatctccactttttaccctctctatgct |
45722088 |
T |
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