View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_high_16 (Length: 359)
Name: NF6429_high_16
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 78 - 351
Target Start/End: Original strand, 40729338 - 40729606
Alignment:
| Q |
78 |
ccataacagctgatctccttattgacttcaacattttaatcatctccttgaaaggaccctcgtattgttgactctatacatcataatctcaaagttgact |
177 |
Q |
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| T |
40729338 |
ccataacagctgatctccttattgacttcaacattttaatcatctccttgaaaggaccctcgtattgttgactctatacatcataatctcaaagttgtct |
40729437 |
T |
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| Q |
178 |
catttaactccaaagcaaacattggcggaaagattcaactccaacatcaaaagttaaagcttgatgaaaagttgtctaccaagaaaagataaacatcttt |
277 |
Q |
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| T |
40729438 |
catttaa-----aagcaaacattggcggaaagattcaactccaacatcaaaagtcaaagcttgatgaaaagttgtctaccaagaaaagataaacatcttt |
40729532 |
T |
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| Q |
278 |
atgagttgaattgatttaaaaacaaatgaagagatttaaaaatgaatggagaactcaacataccatttcatttc |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40729533 |
atgagttgaattgatttaaaaacaaatgaagagatttaaaaatgaatggagaactcaacataccatttcatttc |
40729606 |
T |
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