View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_high_19 (Length: 339)
Name: NF6429_high_19
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 18694369 - 18694061
Alignment:
| Q |
17 |
atgaggttccttcatcagtttcttgtatgatggattgagnnnnnnnngtgcattttgctttttcgtgtatctta-tggttgatgatgatctctatagact |
115 |
Q |
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| T |
18694369 |
atgaggttccttcatcagtttcttgtatgatggattgagttttttttgtgcctcttgctttttcatgtatcttaatggttgatgatgatttctattg--- |
18694273 |
T |
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| Q |
116 |
atggtgtagcttgatgtaaatagtttaccttcaaatcgcaagcgtcttatgcctcgctgttcttatttaaaaattgagattaagcaagtattttgtannn |
215 |
Q |
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| T |
18694272 |
----tgtagcataatgtaaatagtttaccttcaaatcgcaagcgtcttatgcatcgctgttcttgtttaaaaagtgagattaagcaagtattttgtattt |
18694177 |
T |
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| Q |
216 |
nnnncatacgcagggtcaattggggaggctccgctataaactagatcaagaaccttctggaagagatgttctatagatgaaagccggaaagggtgaagtt |
315 |
Q |
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| T |
18694176 |
ttttcgtacgcagggtcaatcgggaaggctccgctataaactagatcaagaaccttctggaagagatgttctatagatgaaagcaggaaagggtgaagtt |
18694077 |
T |
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| Q |
316 |
tttgtgtagtataatc |
331 |
Q |
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| T |
18694076 |
tttgtgtagtaaaatc |
18694061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 10803709 - 10803761
Alignment:
| Q |
153 |
gcaagcgtcttatgcctcgctgttcttatttaa-aaattgagattaagcaagta |
205 |
Q |
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| T |
10803709 |
gcaagcgt-ttatgcctcgcttttcttatttaagaaattgagattaagaaagta |
10803761 |
T |
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