View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_high_22 (Length: 327)
Name: NF6429_high_22
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 16733433 - 16733731
Alignment:
| Q |
18 |
ccaaaagagtttggtaagttgattaatttggttcatttagacctagcaagttgtttcttgaaaggttcaattccacttgagttaggtcaacttaacaagc |
117 |
Q |
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| T |
16733433 |
ccaaaagagtttggtaagttgattaatttggttcatttagacctagcaagttgtttcttgaaaggttcaattccacttgagttaggtcaacttaacaagc |
16733532 |
T |
|
| Q |
118 |
tagatacacttttcttgcnnnnnnntcaactcactggttttattccacctgaattaggtaatttgagtagattgaatgctcttgatttatcactcaataa |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733533 |
tagatacacttttcttgcaaaaaaatcaactcactggttttattccacctgaattaggtaatttgagtagattgaatgctcttgatttatcactcaataa |
16733632 |
T |
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| Q |
218 |
cctaacaggaggaattccgaacgaattctcgaatcttcgagaactttctcttttgaacttgtttatcaataaatttcacagcgaaattcctgatttcat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733633 |
cctaacaggaggaattccgaacgaattctcgaatcttcgagaactttctcttttgaacttgtttatcaataaatttcacagcgaaattcctgatttcat |
16733731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 39227720 - 39227592
Alignment:
| Q |
75 |
ttgaaaggttcaattccacttgagttaggtcaacttaacaagctagatacacttttcttgcnnnnnnntcaactcactggttttattccacctgaattag |
174 |
Q |
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||||||||||||||||||| |||| |||| ||||| |||| ||||| ||||||||||||| |||||| | ||||| ||||||||| |||||| |
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| T |
39227720 |
ttgaaaggttcaattccacatgagctaggaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattag |
39227621 |
T |
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| Q |
175 |
gtaatttgagtagattgaatgctcttgat |
203 |
Q |
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| T |
39227620 |
ggaatcttagtagtttgaaatctcttgat |
39227592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 25546919 - 25546791
Alignment:
| Q |
75 |
ttgaaaggttcaattccacttgagttaggtcaacttaacaagctagatacacttttcttgcnnnnnnntcaactcactggttttattccacctgaattag |
174 |
Q |
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||||||||||||||||||| |||| || | ||||| |||| ||||| ||||||||||||| |||||| | ||||| ||||||||| |||||| |
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| T |
25546919 |
ttgaaaggttcaattccacatgagctacgaaaactttacaaactagacacacttttcttgcaaaccaatcaacttaatggttcaattccacctcaattag |
25546820 |
T |
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| Q |
175 |
gtaatttgagtagattgaatgctcttgat |
203 |
Q |
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| ||| | ||||| ||||| |||||||| |
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| T |
25546819 |
ggaatcttagtagtttgaaatctcttgat |
25546791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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