View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_high_28 (Length: 276)
Name: NF6429_high_28
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 56471984 - 56471735
Alignment:
| Q |
18 |
aggaggaagatagaataataatatcatcaagatcttcatctggtggtgggttgacgttgagagagcctctccttgtgaagaataacaacaggctcaatac |
117 |
Q |
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| T |
56471984 |
aggaggaagatagaataataatatcatcaagatcttcatctggcgg---gttgacgttgagagagcctctccttgtgaagaataacaacaggctcaatac |
56471888 |
T |
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| Q |
118 |
tacctcccaggttgccattgttggagccaatgtttgtcaaattgaaagtcttgactacgagtatgtattgataatgacatatcatcgcttttgtttcaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56471887 |
tacctcccaggttgccattgttggagccaatgtttgtcaaattgaaagtcttgactacgagtatgtattgataatgacatatcatcgcttttgtttcaat |
56471788 |
T |
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| Q |
218 |
ttttcattcattaattaatttaaccttcatgtaggattgttgagaataatcta |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
56471787 |
ttttcattcattaattaatttaaccttcatgtaggattgttgagaatgatcta |
56471735 |
T |
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