View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6429_high_29 (Length: 273)
Name: NF6429_high_29
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 45309438 - 45309177
Alignment:
| Q |
1 |
ttaacattcgttgaatgagagatctcggatacaacatcaagtgccaaaccagtgagctttccaacattgtccaagtagttatctgtttgcaaatgtaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45309438 |
ttaacattcgttgaatgagagatctcggatacaacatcaagtgccaaaccagtgagctttccaacattgtccaagtagttatctgtttgcaaatgtaaca |
45309339 |
T |
|
| Q |
101 |
tggccttattattatcactttttgtatcagaaaagccatcaaggcaagattgttggtaggcaatgacagccccaaataaattcttgagttctaccgaacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45309338 |
tggccttattattatcactttttgtatcagaaaagccatcaaggcaagattgttggtaggcaatgacagccccaaataaattcttgagttctaccgaacg |
45309239 |
T |
|
| Q |
201 |
attgtgtatactgcgaatgctactactttcagtgatgataacttttgatgccttaagttcat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45309238 |
attgtgtatactgcgaatgctactactttcagtgatgataactttagatgccttaagttcat |
45309177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University