View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_high_33 (Length: 250)
Name: NF6429_high_33
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 39404143 - 39404271
Alignment:
| Q |
115 |
gaattgcatggaaagtgggtccatatatttaaacaagtatatataactccaagttgctgatggtaaaggagatgaggaaaattaggctggagattgtata |
214 |
Q |
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| T |
39404143 |
gaattgcatggaaagtgggtccatatatttaaacaagtatatataactccaagttgctgatggtaaaggagatgaggaaaattaggctggagattgtata |
39404242 |
T |
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| Q |
215 |
agaaaattctaatgtaagagtctgtggtg |
243 |
Q |
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| T |
39404243 |
agaaaattctaatgtaagagtctgtggtg |
39404271 |
T |
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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39404029 - 39404064
Alignment:
| Q |
1 |
cattaacccaaaaatatattgcagcagcatatcatc |
36 |
Q |
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| T |
39404029 |
cattaacccaaaaatatattgcagcagcatatcatc |
39404064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 47757682 - 47757753
Alignment:
| Q |
164 |
caagttgctgatggtaaaggagatgaggaaaattaggctggagattgtataagaaaattctaatgtaagagt |
235 |
Q |
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| T |
47757682 |
caagttgctgatggtaaaggagatgaggcaaattaggctggagattgtatcagcaagttctaatgttagagt |
47757753 |
T |
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