View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_high_35 (Length: 247)
Name: NF6429_high_35
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 8320651 - 8320479
Alignment:
| Q |
1 |
atgccttccatcttgataactattacttcgataggaaacatgaatccatccaccttgatcatcacattttccaacactccttaggcaattttgcttgtac |
100 |
Q |
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| T |
8320651 |
atgccttccatcttcataactattacttcgataggaaacatgaatccatccaccttgatcatcacattttccaccactccttaggcaattttgcttgtac |
8320552 |
T |
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| Q |
101 |
cgtctgcaaggttgacctaacacaggtttggcttcaatccatcgatcttcttaaaaagtgaaagtgacatcat |
173 |
Q |
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| T |
8320551 |
cgtctgctaggttgacctaacacaggtttggcttcaatccatcgatcttcttaaaaagtgaaagtgacatcat |
8320479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 8320331 - 8320279
Alignment:
| Q |
180 |
ctttagttgccttcgtgcactgagtgatcatcacttttaggctcagtaccctt |
232 |
Q |
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| T |
8320331 |
ctttagtcgccttcgtgcactgagtgatcatcacttttaggctcagtaccctt |
8320279 |
T |
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