View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6429_high_4 (Length: 573)

Name: NF6429_high_4
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6429_high_4
NF6429_high_4
[»] chr4 (1 HSPs)
chr4 (9-556)||(24280476-24281044)


Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 9 - 556
Target Start/End: Complemental strand, 24281044 - 24280476
Alignment:
Q  9 gacatcatcatcacaaagaaaaaataagtatattatggacaaattaaatcaagagtttgactaaattaaaggatgttttatttttataagtccatttgta 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24281044 gacatcatcatcacaaagaaaaaatacgtatattatggacaaattaaatcaagagtttgactaaattaaaggatgttttatttttataagtccatttgta 24280945  T
Q  109 aacagaccttgaaagccaaggaatctacttaactcctaatgcactgc-----------------tgccatatgtgagactgatgtgcaaacccactatcc 191  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  |                 ||||||||||||||||||||||||||||||||||||    
T  24280944 aacagaccttgaaagccaaggaatctaattaactcctaatgcacgcccatatttcaacgtcaactgccatatgtgagactgatgtgcaaacccactatcc 24280845  T
Q  192 actacccgacactggatatgttctacttgtagcatgctaactacgtctactttgcaatttgcaaatttattattatctccttgagtaatctttaagatct 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24280844 actacccgacactggatatgttctacttgtagcatgctaactacgtctactttgcaatttgcaaatttattattatctccttgagtaatctttaagatct 24280745  T
Q  292 ttcctttgttttttcttatgtagatatatggttagtcaaat--acagaaacctaaagagaagttaattaattgtcatatccacttgacgtgttttacatt 389  Q
    ||||||||||||||||||||| |||||||||||||||||||  | ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  24280744 ttcctttgttttttcttatgtggatatatggttagtcaaataaaaagaaacctaaagaaaagttaattaattgtcatatccacttgacgtattttacatt 24280645  T
Q  390 ttctagaattttagcaatgacaactagtttggttgttttttccaagtaaaacaagacattttaatgttgtt--nnnnnnngacactttaatgaacgacta 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||         |||| |||||||||||||||    
T  24280644 ttctagaattttagcaatgacaactagtttggttgttttttccaagtaaaagaagacactttaatgttcttaaaaaaaaagacaatttaatgaacgacta 24280545  T
Q  488 taagactaattactcgagatgaatgcgatacatttaagaggttgacatttactaatatattttcgtatg 556  Q
     |||| |||||| || ||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  24280544 caagattaattattcaagatgaatgcgatacatttaagaggttgatatttactaacatattttcgtatg 24280476  T

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