View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_high_6 (Length: 530)
Name: NF6429_high_6
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 44 - 358
Target Start/End: Original strand, 31291878 - 31292192
Alignment:
| Q |
44 |
attgtaatta-tatatcctttttattgtaattagtcaaatcattatcttgtgttcttgacagttcttttttattgaattagaatgttgtatgtttttgat |
142 |
Q |
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| T |
31291878 |
attgtaattagtatatcctttttattgtaattagtcaaatcattatcttgtgttcttgacagttcttttttattgaattagaatgttgtatgtttttggt |
31291977 |
T |
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| Q |
143 |
acacgactattttataacattgtattttgttctattattttattagattctaatcgttaaaataacgtgggagggattgtttaggcggaaataatgtgtg |
242 |
Q |
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| T |
31291978 |
acacgaatattttataacattgtattttgttctattattttattagattctagtcgttaaaataacgtgggagggattgtttaggcggaaataatgtggg |
31292077 |
T |
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| Q |
243 |
agggattaattagtagcataaagccatacatatttttatgggtgtataattcgttacttggaaaggtttctttcatcatcacattcacactcacaaataa |
342 |
Q |
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| T |
31292078 |
agggatt-agtagtagcataaagccataaatatttttatgggtgtataattcgttacttggaaaggtttctttgatcatcacattcacactcataaataa |
31292176 |
T |
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| Q |
343 |
tgggttatgtggttcc |
358 |
Q |
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| T |
31292177 |
tgggttatgtggttcc |
31292192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 410 - 518
Target Start/End: Original strand, 31292236 - 31292344
Alignment:
| Q |
410 |
acaaacaattttaattaggtatatgatcttgttggacgtgagatccttgggttgatgacgttgaatgacctttgtgtaggatatatgtctgacttgcttc |
509 |
Q |
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| T |
31292236 |
acaaacaattttaattaggtatatgatcttgttggacgtgagatccttgggttgatgacgttgaatgacctttgtgtaggacatatgtctgacttgcttc |
31292335 |
T |
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| Q |
510 |
cttcttctc |
518 |
Q |
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| T |
31292336 |
cttcttctc |
31292344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 39838508 - 39838411
Alignment:
| Q |
123 |
gaatgttgtatgtttttgatacacgactattttataacattgtattttgttctattattttattagattctaatcgttaaaataacgtgggagggatt |
220 |
Q |
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| T |
39838508 |
gaatgttatatgtttttggtatgtgaatattttacaacattatattctgttctattattttattagattctagttgttaaaataatgtgggagggatt |
39838411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 39838393 - 39838333
Alignment:
| Q |
278 |
ttatgggtgtataattcgttacttggaaaggtttctttcatcatcacattcacactcacaa |
338 |
Q |
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| T |
39838393 |
ttatgggggaataattctttacttggaaaggtttcttcaatcatcacattcacactcacaa |
39838333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 31288933 - 31288838
Alignment:
| Q |
79 |
aaatcattatcttgtgttcttgacagttcttttttattgaattagaatgttgtatgtttttgatacacgactattttataacattgtattttgttct |
175 |
Q |
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| T |
31288933 |
aaatcataatcttgtgttcaggacag-tcctttttattgatttagaatgttatatggttttggtatgtgaatgttttacaacattgtattttattct |
31288838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 49191324 - 49191373
Alignment:
| Q |
433 |
tgatcttgttggacgtgagatccttgggttgatgacgttgaatgaccttt |
482 |
Q |
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| T |
49191324 |
tgattttgttggacttgagatcattgagttgatgtcgttgaatgaccttt |
49191373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 484
Target Start/End: Original strand, 15932192 - 15932225
Alignment:
| Q |
451 |
gatccttgggttgatgacgttgaatgacctttgt |
484 |
Q |
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| T |
15932192 |
gatccttgggttgatgacattgaatgacctttgt |
15932225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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