View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6429_low_11 (Length: 414)

Name: NF6429_low_11
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6429_low_11
NF6429_low_11
[»] chr3 (3 HSPs)
chr3 (15-396)||(8259494-8259876)
chr3 (39-140)||(10849476-10849577)
chr3 (282-358)||(22897733-22897809)
[»] chr2 (7 HSPs)
chr2 (264-383)||(12092499-12092618)
chr2 (17-102)||(27345778-27345863)
chr2 (19-102)||(23928358-23928441)
chr2 (19-101)||(29567008-29567090)
chr2 (19-101)||(19027186-19027268)
chr2 (264-389)||(23928075-23928200)
chr2 (28-148)||(12092731-12092851)
[»] chr8 (4 HSPs)
chr8 (28-383)||(15270352-15270705)
chr8 (253-388)||(22378435-22378570)
chr8 (253-388)||(22384610-22384745)
chr8 (19-101)||(22619373-22619455)
[»] scaffold0483 (2 HSPs)
scaffold0483 (264-373)||(7608-7717)
scaffold0483 (19-101)||(7878-7960)
[»] scaffold1272 (1 HSPs)
scaffold1272 (264-358)||(1240-1334)
[»] scaffold0034 (2 HSPs)
scaffold0034 (19-101)||(26260-26342)
scaffold0034 (264-385)||(26503-26624)
[»] chr4 (5 HSPs)
chr4 (19-101)||(10270078-10270160)
chr4 (26-101)||(16288022-16288097)
chr4 (19-102)||(18278000-18278083)
chr4 (20-101)||(21335991-21336072)
chr4 (20-89)||(15311649-15311718)
[»] scaffold0008 (1 HSPs)
scaffold0008 (19-102)||(251944-252027)
[»] scaffold0039 (1 HSPs)
scaffold0039 (19-148)||(114082-114208)
[»] chr6 (3 HSPs)
chr6 (306-391)||(18734290-18734375)
chr6 (17-101)||(18734577-18734661)
chr6 (17-101)||(19861576-19861660)
[»] chr5 (4 HSPs)
chr5 (19-102)||(23491026-23491109)
chr5 (306-389)||(42790794-42790877)
chr5 (264-349)||(23490781-23490866)
chr5 (17-101)||(42791091-42791175)
[»] chr1 (3 HSPs)
chr1 (19-102)||(24975326-24975409)
chr1 (24-146)||(23934985-23935107)
chr1 (264-373)||(24975569-24975678)
[»] scaffold0063 (1 HSPs)
scaffold0063 (19-101)||(38253-38335)
[»] chr7 (2 HSPs)
chr7 (19-101)||(18184205-18184287)
chr7 (312-373)||(18159622-18159683)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 8259876 - 8259494
Alignment:
Q  15 cacagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaa 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  8259876 cacagacagcctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggaaagcctgcccgtgaa 8259777  T
Q  115 ggcgagggacccgtcggtcgcttcacggaatacatgtccttggcgttgtccagggnnnnnnn-tcctagcttagattgcaattgccgatctgaaagaagt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||||||||||||||||    
T  8259776 ggcgagggacccgtcggtcgcttcacggaatacatgtccttggcgttgtccagggaaaaaaaatcctagcttagattgcaattaccgatctgaaagaagt 8259677  T
Q  214 tgggatcaaacccgccaaaaactcctactcaggaaaataagggaaccgataaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatga 313  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8259676 tgggatcaaacccgccaaaaactcctactcaagaaaataagggaaccgataaaacaaagtattgccgattccacaagtgtcatagacacttgactgatga 8259577  T
Q  314 ctgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaaccccgagcctgaga 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8259576 ctgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaaccccgagcctgaga 8259494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 10849476 - 10849577
Alignment:
Q  39 gaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcgagggacccgtcggtcgcttc 138  Q
    |||||| |||| ||||| |||||| || | |||||| ||||| ||||||||||||| ||||||  || ||| ||||||| | || || | ||||||||||    
T  10849476 gaaggaggaacttgcttctgaatcctctagaaagcccttccatgagaaaaagaagggaggcaaagctccccttgaaggcaaagggccaggcggtcgcttc 10849575  T
Q  139 ac 140  Q
    ||    
T  10849576 ac 10849577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 22897809 - 22897733
Alignment:
Q  282 ttccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgagg 358  Q
    ||||||||||||||| |||||   | ||| || ||||| || || |||||| | |||||||||||||||||||||||    
T  22897809 ttccacaagtgtcatggacacacaaatgacgagtgcattcacctcaaggatgctattgaaatcctcatacaacgagg 22897733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 383
Target Start/End: Complemental strand, 12092618 - 12092499
Alignment:
Q  264 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 363  Q
    |||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||| || | ||||||||| ||||||||| ||||||||    
T  12092618 aaaacaaaatattgtcggttccacaagtgtcacggacacttgactgatgactgcatccatttgaagaatgcaattgaaatcgtcatacaacaaggtcggc 12092519  T
Q  364 tcaatcagttgaccaagaac 383  Q
    |||| ||||| |||||||||    
T  12092518 tcaagcagttcaccaagaac 12092499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 27345863 - 27345778
Alignment:
Q  17 cagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 102  Q
    |||||| ||||||||||||||||||||| || | ||||  ||| || ||||||||||| ||||| |||||||||||||||||||||    
T  27345863 cagacagcctcaacaaatccaggaaggaggagcctgctgctgagtcctccaaaaagcccttccacgagaaaaagaaggaaggcaag 27345778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 23928441 - 23928358
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 102  Q
    |||| ||||||||||||||||||||| || | ||||  |||||| ||||||||||| ||||| |||||||||| ||||||||||    
T  23928441 gacagcctcaacaaatccaggaaggaggagcctgctgctgaatcctccaaaaagcccttccatgagaaaaagagggaaggcaag 23928358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 29567090 - 29567008
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||| ||||||||||||||||||||| |||| ||||  |||||| |||||||| || ||||| |||||||||| |||||||||    
T  29567090 gacagcctcaacaaatccaggaaggaggaacctgctgctgaatcctccaaaaatcccttccatgagaaaaagagggaaggcaa 29567008  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 19027268 - 19027186
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    ||||||||||||||  ||| ||| || |||  ||||  |||||| ||||||||||| ||||| ||||||||||||||||||||    
T  19027268 gacaacctcaacaaggccaagaatgaggaaactgctgctgaatcctccaaaaagcccttccacgagaaaaagaaggaaggcaa 19027186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 23928200 - 23928075
Alignment:
Q  264 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 363  Q
    |||||||| |||||||  |||||||||| |||  | ||| | | |||||||||||||||  |||||||| |||||||| || |||| |||||||| || |    
T  23928200 aaaacaaaatattgtcagttccacaagtttcacgggcacgtcattgatgactgcatccacttgaaggatgccattgaactcttcatccaacgaggacgac 23928101  T
Q  364 tcaatcagttgaccaagaaccccgag 389  Q
    |||| || || | ||||| |||||||    
T  23928100 tcaaacaattcatcaagacccccgag 23928075  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 12092851 - 12092731
Alignment:
Q  28 aacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcgagggacccg 127  Q
    |||||| ||||||||||||||| | |   |||||||||||||||  | ||| ||||||||||||||||||| || | |||   |||| || | ||||||     
T  12092851 aacaaaaccaggaaggaagaacctaccgctgaatcttccaaaaaatccttctaagagaaaaagaaggaaggaaaacatgcatgtgaaagcaaaggaccca 12092752  T
Q  128 tcggtcgcttcacggaataca 148  Q
    || |||||||||| |||||||    
T  12092751 tccgtcgcttcaccgaataca 12092731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 28 - 383
Target Start/End: Complemental strand, 15270705 - 15270352
Alignment:
Q  28 aacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcgagggacccg 127  Q
    ||||||||||  |||||||| |||| |  |||||||||||||| ||  ||||||||||| |||||||||||||  |||||||  |||||  |  |||  |    
T  15270705 aacaaatccaataaggaagatcatgttggtgaatcttccaaaatgctcttccaagagaagaagaaggaaggcattcctgcccgggaaggaaaaagacttg 15270606  T
Q  128 tcggtcgcttcacggaatacatgtccttggcgttgtccagggnnnnnnntcctagcttagattgcaattgccgatctgaaagaagttgggatcaaacccg 227  Q
    |||||||||||||||| ||||   |||||||| ||||||| |       |||||||| |||| ||||||||| ||   ||||| | |||| |||||||      
T  15270605 tcggtcgcttcacggagtacacacccttggcgatgtccagtgataaaa-tcctagctgagatcgcaattgccaattcaaaagaggctggg-tcaaacca- 15270509  T
Q  228 ccaaaaactcctactcaggaaaataagggaaccgataaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccat-ctg 326  Q
    |||||  ||||  ||||||| || ||||||||| ||||||||||||||  ||| |||||||||||||| | |||||||| | | || ||||||||| |||    
T  15270508 ccaaaggctccctctcaggagaagaagggaaccaataaaacaaagtatattcggttccacaagtgtcacatacacttgaatcacgattgcatccatcctg 15270409  T
Q  327 aaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaac 383  Q
    |||||| ||||| ||||||||||||||| ||| || ||||| |||||  ||||||||    
T  15270408 aaggatgccatttaaatcctcatacaacaaggccgactcaagcagtttgccaagaac 15270352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 388
Target Start/End: Complemental strand, 22378570 - 22378435
Alignment:
Q  253 agggaaccgataaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcataca 352  Q
    |||| ||||| |||||||| ||| |||| |||||||||||| | ||||| |||| | | || || ||||||||||||||| | |||||||||||||||||    
T  22378570 aggggaccgacaaaacaaaatatcgtcggttccacaagtgttagagacatttgattaacgattgtatccatctgaaggatgcaattgaaatcctcataca 22378471  T
Q  353 acgaggtcggctcaatcagttgaccaagaaccccga 388  Q
    ||||| ||| ||||| ||||| ||||||||| ||||    
T  22378470 acgagatcgactcaagcagttcaccaagaactccga 22378435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 388
Target Start/End: Complemental strand, 22384745 - 22384610
Alignment:
Q  253 agggaaccgataaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcataca 352  Q
    |||| ||||| |||||||| ||| |||| |||||||||||| | ||||| |||| | | || || ||||||||||||||| | |||||||||||||||||    
T  22384745 aggggaccgacaaaacaaaatatcgtcggttccacaagtgttagagacatttgattaacgattgtatccatctgaaggatgcaattgaaatcctcataca 22384646  T
Q  353 acgaggtcggctcaatcagttgaccaagaaccccga 388  Q
    ||||| ||| ||||| ||||| ||||||||| ||||    
T  22384645 acgagatcgactcaagcagttcaccaagaactccga 22384610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 22619373 - 22619455
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||||||||||||||||||||||||| || | ||||  |||||  ||||||||||| ||||| ||||||||||||||||||||    
T  22619373 gacaacctcaacaaatccaggaaggaggagcctgctgctgaattctccaaaaagcccttccatgagaaaaagaaggaaggcaa 22619455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 373
Target Start/End: Complemental strand, 7717 - 7608
Alignment:
Q  264 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 363  Q
    |||||||| |||||||||||||||||||||||  | ||| | ||||| || |||||||||||||||||| ||||| || ||||||| |||||||| || |    
T  7717 aaaacaaaatattgtcgattccacaagtgtcacggtcacgtcactgacgattgcatccatctgaaggattccatttaactcctcatccaacgaggacgcc 7618  T
Q  364 tcaatcagtt 373  Q
    |||| |||||    
T  7617 tcaaacagtt 7608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 7960 - 7878
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    ||||||||||||||||| |||||||| || | ||||| |||||| ||||||| ||| ||||| ||||||||||||||||||||    
T  7960 gacaacctcaacaaatctaggaaggaggagcctgcttctgaatcctccaaaacgcccttccatgagaaaaagaaggaaggcaa 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1272 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1272
Description:

Target: scaffold1272; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 358
Target Start/End: Complemental strand, 1334 - 1240
Alignment:
Q  264 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgagg 358  Q
    |||||||| |||||||||||||||||||||||  | ||| | ||||| || |||||||||||||||||| ||||| || ||||||| ||||||||    
T  1334 aaaacaaaatattgtcgattccacaagtgtcacggtcacgtcactgacgattgcatccatctgaaggattccatttaactcctcatccaacgagg 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 26260 - 26342
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||||||||||||||||||||||||| || | ||||  |||||| |||||||| || ||||| |||||||||| |||||||||    
T  26260 gacaacctcaacaaatccaggaaggaggagcctgctgctgaatcctccaaaaatcccttccatgagaaaaagagggaaggcaa 26342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 385
Target Start/End: Original strand, 26503 - 26624
Alignment:
Q  264 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 363  Q
    |||||||| |||||||||||||||||||| ||  | ||| | || || |||||||||||||| |||||| | |||||  ||||||| |||||||| || |    
T  26503 aaaacaaaatattgtcgattccacaagtgccacgggcacgtcaccgacgactgcatccatctaaaggatgctattgagctcctcatccaacgaggacgcc 26602  T
Q  364 tcaatcagttgaccaagaaccc 385  Q
    |||| ||||| | |||||||||    
T  26603 tcaaacagttcatcaagaaccc 26624  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 10270078 - 10270160
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||||||||||||||| ||||||||| || | ||||  |||||| ||||||||||| ||||| |||||||||| |||||||||    
T  10270078 gacaacctcaacaaattcaggaaggaggagcctgctgctgaatcctccaaaaagcccttccatgagaaaaagagggaaggcaa 10270160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 16288097 - 16288022
Alignment:
Q  26 tcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||||||  |||||||||| || | ||||| |||||| ||||||||||| ||||| |||||||||| |||||||||    
T  16288097 tcaacaaggccaggaaggaggagcctgcttctgaatcctccaaaaagcccttccatgagaaaaagagggaaggcaa 16288022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 18278000 - 18278083
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 102  Q
    ||||||||| | |||||||||| ||| || | ||||  ||| || ||||||||||| ||||| |||||||||||||||||||||    
T  18278000 gacaacctccataaatccaggacggaggagcctgctgctgagtcctccaaaaagcccttccacgagaaaaagaaggaaggcaag 18278083  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 21335991 - 21336072
Alignment:
Q  20 acaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||||||||| |||||||||||| | || | ||||  | |||| ||||||||||| ||||| |||||||||| |||||||||    
T  21335991 acaacctcaaaaaatccaggaagaaggagcctgctgctaaatcctccaaaaagcccttccatgagaaaaagagggaaggcaa 21336072  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 15311718 - 15311649
Alignment:
Q  20 acaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaa 89  Q
    |||||||||||||||| |||||||| || ||| |   |||||| ||||||||||| ||||| ||||||||    
T  15311718 acaacctcaacaaatctaggaaggatgatcataccgctgaatcctccaaaaagcccttccatgagaaaaa 15311649  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 252027 - 251944
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 102  Q
    |||| ||||||||||||||||||||| || | ||||  |||||| ||||||||||| ||||| |||||||| | ||||||||||    
T  252027 gacagcctcaacaaatccaggaaggaggagcctgctgctgaatcctccaaaaagcccttccatgagaaaaaaagggaaggcaag 251944  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 114082 - 114208
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcg 118  Q
    |||||||| ||||||  ||||||||||||   || |  |||||||||||||||||| |||||  |||||||  |||||| ||||||||||||||||||      
T  114082 gacaacctaaacaaaaacaggaaggaagagtctgttgctgaatcttccaaaaagccgttccattagaaaaa--aggaag-caagcctgcccatgaaggaa 114178  T
Q  119 agggacccgtcggtcgcttcacggaataca 148  Q
    | |||||||| ||||||| ||| |||||||    
T  114179 aaggacccgttggtcgctacacagaataca 114208  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 391
Target Start/End: Complemental strand, 18734375 - 18734290
Alignment:
Q  306 actgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaaccccgagcc 391  Q
    ||||| ||||||||||| ||  ||||| |||||||| ||||||| |||||||| |||||||| ||||| | |||||||||| ||||    
T  18734375 actgacgactgcatccacctagaggatgccattgaactcctcattcaacgaggacggctcaagcagttcatcaagaaccccaagcc 18734290  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 18734661 - 18734577
Alignment:
Q  17 cagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||||| ||||||||||||||||||||| || | |||| ||||||| | |||||| || ||||| || ||||||| |||||||||    
T  18734661 cagacagcctcaacaaatccaggaaggaggagcctgctgttgaatccttcaaaaatcccttccatgacaaaaagagggaaggcaa 18734577  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 19861576 - 19861660
Alignment:
Q  17 cagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    ||||||||||||||||||||| |||||| || | ||||  |||||| ||||||||||  |||||  ||||||||| |||||||||    
T  19861576 cagacaacctcaacaaatccaagaaggaggagcctgctgctgaatcctccaaaaagctcttccattagaaaaagagggaaggcaa 19861660  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 23491109 - 23491026
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 102  Q
    ||||||||||||||||| |||||||| || | | ||  ||| || ||||||||||| ||||| ||||| |||||||||||||||    
T  23491109 gacaacctcaacaaatctaggaaggaggagcctactgctgagtcctccaaaaagcccttccacgagaagaagaaggaaggcaag 23491026  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 42790877 - 42790794
Alignment:
Q  306 actgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaaccccgag 389  Q
    ||||| ||||||||||| ||||||||  |||| ||| ||||||| ||||||||  | ||||| ||||| | |||||||||||||    
T  42790877 actgacgactgcatccacctgaaggacgccatcgaactcctcatccaacgaggatgactcaagcagttcatcaagaaccccgag 42790794  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 23490866 - 23490781
Alignment:
Q  264 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcat 349  Q
    |||||||| || |||||||||||||| || ||| |||||   ||||| ||||||||||||||||| ||| | |||||  |||||||    
T  23490866 aaaacaaaatactgtcgattccacaaatgccatggacacaccactgacgactgcatccatctgaaagatgctattgagctcctcat 23490781  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 42791175 - 42791091
Alignment:
Q  17 cagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||||| ||||||||||||||| ||||| || | |||   |||||| |||||||| || ||||| ||||| |||| |||||||||    
T  42791175 cagacagcctcaacaaatccagaaaggaggagcctgccgctgaatcctccaaaaatcccttccatgagaagaagagggaaggcaa 42791091  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 24975326 - 24975409
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 102  Q
    ||||||||||||||||||||||| || || | ||||  ||| || |||||||| || ||||| ||||| |||||||||||||||    
T  24975326 gacaacctcaacaaatccaggaaagaggagcctgctgctgagtcctccaaaaaacccttccacgagaagaagaaggaaggcaag 24975409  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 23934985 - 23935107
Alignment:
Q  24 cctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcgaggga 123  Q
    |||||||||| |||||||||| || | ||||  |||||| ||||||||||| ||| | || || || |||||||| || ||||| | ||||||| | |||    
T  23934985 cctcaacaaacccaggaaggaggagcctgctgctgaatcctccaaaaagcccttctatgacaagaaaaaggaaggaaaacctgctcgtgaaggcaaagga 23935084  T
Q  124 cccgtcggtcgcttcacggaata 146  Q
    | ||| |||||||||| ||||||    
T  23935085 ctcgttggtcgcttcatggaata 23935107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 373
Target Start/End: Original strand, 24975569 - 24975678
Alignment:
Q  264 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 363  Q
    |||||||| ||||||||||||||||| || ||| |||||   ||||| |||||||||||| |||| |||   |||||  ||||||| ||| |||| || |    
T  24975569 aaaacaaaatattgtcgattccacaaatgccatggacacaccactgacgactgcatccatatgaaagatgttattgagctcctcattcaaagaggacgac 24975668  T
Q  364 tcaatcagtt 373  Q
    |||| |||||    
T  24975669 tcaaacagtt 24975678  T

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Target: scaffold0063 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 38253 - 38335
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||||||| ||||||||||| ||||| || | ||||  |||||| |||||||| || ||||| ||||||||| ||||||||||    
T  38253 gacaaccttaacaaatccagtaaggaggagcctgctcatgaatcctccaaaaatcccttccatgagaaaaagtaggaaggcaa 38335  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 18184287 - 18184205
Alignment:
Q  19 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 101  Q
    |||| |||||||||||||| |||||| || | ||||  |||||| ||||||||| | || || ||||||||||||||||||||    
T  18184287 gacatcctcaacaaatccaagaaggaggagcctgctgctgaatcctccaaaaagaccttgcatgagaaaaagaaggaaggcaa 18184205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 18159683 - 18159622
Alignment:
Q  312 gactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagtt 373  Q
    ||||||||||||||||||||| | |||||  ||||||| ||| ||||||| ||||| |||||    
T  18159683 gactgcatccatctgaaggatgctattgagctcctcatccaaagaggtcgactcaaacagtt 18159622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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